Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6I50_RS15490 Genome accession   NZ_CP068195
Coordinates   3186723..3187124 (-) Length   133 a.a.
NCBI ID   WP_005401157.1    Uniprot ID   A0AAW6RPN2
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3181723..3192124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS15460 (I6I50_15460) tadA 3181979..3182479 (-) 501 WP_201706556.1 tRNA adenosine(34) deaminase TadA -
  I6I50_RS15465 (I6I50_15465) - 3182485..3183606 (-) 1122 WP_201703532.1 enoyl-CoA hydratase/isomerase family protein -
  I6I50_RS15470 (I6I50_15470) ung 3183603..3184316 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  I6I50_RS15475 (I6I50_15475) - 3184358..3184954 (-) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  I6I50_RS15480 (I6I50_15480) gspK 3185077..3186027 (-) 951 WP_010326849.1 type II secretion system minor pseudopilin GspK -
  I6I50_RS15485 (I6I50_15485) xcpW 3186106..3186726 (-) 621 WP_005401158.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6I50_RS15490 (I6I50_15490) xcpV 3186723..3187124 (-) 402 WP_005401157.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  I6I50_RS15495 (I6I50_15495) - 3187159..3187728 (-) 570 WP_010326852.1 type II secretion system protein -
  I6I50_RS15500 (I6I50_15500) - 3187741..3188355 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  I6I50_RS15505 (I6I50_15505) - 3188401..3189174 (-) 774 WP_005401155.1 TatD family hydrolase -
  I6I50_RS15510 (I6I50_15510) - 3189201..3189542 (-) 342 WP_005401154.1 PilZ domain-containing protein -
  I6I50_RS15515 (I6I50_15515) - 3189557..3190540 (-) 984 WP_005401153.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  I6I50_RS15520 (I6I50_15520) kdsB 3190560..3191321 (-) 762 WP_005401152.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14688.71 Da        Isoelectric Point: 8.6130

>NTDB_id=527958 I6I50_RS15490 WP_005401157.1 3186723..3187124(-) (xcpV) [Acinetobacter johnsonii strain FDAARGOS_1093]
MKHYFINPHSGFTLLEVMVALAIFATTAVALTKVGMQYTQSTGHAILRTKSQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=527958 I6I50_RS15490 WP_005401157.1 3186723..3187124(-) (xcpV) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAAACATTATTTCATTAATCCTCACTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAAC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACTGGACATGCGATTTTACGTACTAAGTCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATCAGTACTAATGTGCAACGCGTCAATGTACAAGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTCAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.504

87.97

0.647