NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	I6I50_RS15485	Genome accession	NZ_CP068195
Coordinates	3186106..3186726 (-)	Length	206 a.a.
NCBI ID	WP_005401158.1	Uniprot ID	A0AAW6RPI3
Organism	Acinetobacter johnsonii strain FDAARGOS_1093
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3181106..3191726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I50_RS15455 (I6I50_15455)	-	3181472..3181903 (-)	432	WP_176537564.1	SRPBCC family protein	-
I6I50_RS15460 (I6I50_15460)	tadA	3181979..3182479 (-)	501	WP_201706556.1	tRNA adenosine(34) deaminase TadA	-
I6I50_RS15465 (I6I50_15465)	-	3182485..3183606 (-)	1122	WP_201703532.1	enoyl-CoA hydratase/isomerase family protein	-
I6I50_RS15470 (I6I50_15470)	ung	3183603..3184316 (-)	714	WP_004696856.1	uracil-DNA glycosylase	-
I6I50_RS15475 (I6I50_15475)	-	3184358..3184954 (-)	597	WP_004696854.1	6-carboxytetrahydropterin synthase	-
I6I50_RS15480 (I6I50_15480)	gspK	3185077..3186027 (-)	951	WP_010326849.1	type II secretion system minor pseudopilin GspK	-
I6I50_RS15485 (I6I50_15485)	xcpW	3186106..3186726 (-)	621	WP_005401158.1	type II secretion system minor pseudopilin GspJ	Machinery gene
I6I50_RS15490 (I6I50_15490)	xcpV	3186723..3187124 (-)	402	WP_005401157.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
I6I50_RS15495 (I6I50_15495)	-	3187159..3187728 (-)	570	WP_010326852.1	type II secretion system protein	-
I6I50_RS15500 (I6I50_15500)	-	3187741..3188355 (-)	615	WP_004696845.1	TetR/AcrR family transcriptional regulator	-
I6I50_RS15505 (I6I50_15505)	-	3188401..3189174 (-)	774	WP_005401155.1	TatD family hydrolase	-
I6I50_RS15510 (I6I50_15510)	-	3189201..3189542 (-)	342	WP_005401154.1	PilZ domain-containing protein	-
I6I50_RS15515 (I6I50_15515)	-	3189557..3190540 (-)	984	WP_005401153.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
I6I50_RS15520 (I6I50_15520)	kdsB	3190560..3191321 (-)	762	WP_005401152.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 206 a.a. Molecular weight: 23576.16 Da Isoelectric Point: 5.9785

                                >NTDB_id=527957 I6I50_RS15485 WP_005401158.1 3186106..3186726(-) (xcpW) [Acinetobacter johnsonii strain FDAARGOS_1093]

MKKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPVTANVAGQVQPAVM

LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP

EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide

Download Length: 621 bp

                                >NTDB_id=527957 I6I50_RS15485 WP_005401158.1 3186106..3186726(-) (xcpW) [Acinetobacter johnsonii strain FDAARGOS_1093]

ATGAAAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG

GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT

ATCAACAAGTGTTACGTGACACTGTGCAAATTGTACCAGTTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG

TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT

TGAATATATTTACAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC

CAGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT

GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA

AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	58.209	97.573	0.568

Detailed information NTG0527957