Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6I50_RS08960 Genome accession   NZ_CP068195
Coordinates   1850058..1850456 (+) Length   132 a.a.
NCBI ID   WP_029574943.1    Uniprot ID   A0AAJ6IBM2
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1845058..1855456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS08945 (I6I50_08945) - 1846046..1848352 (+) 2307 WP_004979149.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  I6I50_RS08950 (I6I50_08950) - 1848392..1849159 (-) 768 WP_010325928.1 SDR family oxidoreductase -
  I6I50_RS08955 (I6I50_08955) mazG 1849278..1850039 (+) 762 WP_010325929.1 nucleoside triphosphate pyrophosphohydrolase -
  I6I50_RS08960 (I6I50_08960) comEA 1850058..1850456 (+) 399 WP_029574943.1 ComEA family DNA-binding protein Machinery gene
  I6I50_RS08965 (I6I50_08965) pcnB 1850594..1852063 (+) 1470 WP_010325931.1 polynucleotide adenylyltransferase PcnB -
  I6I50_RS08970 (I6I50_08970) folK 1852060..1852548 (+) 489 WP_010325932.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6I50_RS08975 (I6I50_08975) panB 1852585..1853394 (+) 810 WP_010325933.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6I50_RS08980 (I6I50_08980) panC 1853398..1854240 (+) 843 WP_010325934.1 pantoate--beta-alanine ligase -
  I6I50_RS08985 (I6I50_08985) rapZ 1854267..1855118 (+) 852 WP_004692298.1 RNase adapter RapZ -
  I6I50_RS08990 (I6I50_08990) - 1855115..1855384 (+) 270 WP_010325935.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14697.19 Da        Isoelectric Point: 10.8498

>NTDB_id=527949 I6I50_RS08960 WP_029574943.1 1850058..1850456(+) (comEA) [Acinetobacter johnsonii strain FDAARGOS_1093]
MIKIKVSLLIIALLLLSLLAWIPSSYAQSFDQNYLNWKAEQQVWDDRIQAPKSVKRAVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=527949 I6I50_RS08960 WP_029574943.1 1850058..1850456(+) (comEA) [Acinetobacter johnsonii strain FDAARGOS_1093]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCGTGGATACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTATCTGAACTGGAAAGCAGAGCAGCAGGTGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAGCTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.918

92.424

0.508
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492