Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I50_RS03555 Genome accession   NZ_CP068195
Coordinates   700784..701431 (+) Length   215 a.a.
NCBI ID   WP_125273538.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695784..706431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS03535 (I6I50_03535) - 696887..697123 (+) 237 WP_227556907.1 hypothetical protein -
  I6I50_RS03540 (I6I50_03540) - 697193..697702 (+) 510 Protein_679 IS30-like element ISAba125 family transposase -
  I6I50_RS03545 (I6I50_03545) - 697903..698718 (-) 816 WP_201706820.1 NAD-dependent epimerase/dehydratase family protein -
  I6I50_RS03550 (I6I50_03550) recG 698752..700797 (+) 2046 WP_201706821.1 ATP-dependent DNA helicase RecG -
  I6I50_RS03555 (I6I50_03555) comF 700784..701431 (+) 648 WP_125273538.1 ComF family protein Machinery gene
  I6I50_RS03560 (I6I50_03560) - 701432..701836 (-) 405 WP_004691357.1 NUDIX domain-containing protein -
  I6I50_RS03565 (I6I50_03565) - 701833..702432 (-) 600 WP_004691359.1 TIGR00730 family Rossman fold protein -
  I6I50_RS03570 (I6I50_03570) - 702585..703598 (+) 1014 WP_004691361.1 CorA family divalent cation transporter -
  I6I50_RS03575 (I6I50_03575) - 703680..703967 (-) 288 WP_004691363.1 lipid asymmetry maintenance protein MlaB -
  I6I50_RS03580 (I6I50_03580) - 703979..704614 (-) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  I6I50_RS03585 (I6I50_03585) - 704635..705309 (-) 675 WP_004691366.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6I50_RS03590 (I6I50_03590) mlaE 705309..706088 (-) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24934.08 Da        Isoelectric Point: 9.2023

>NTDB_id=527926 I6I50_RS03555 WP_125273538.1 700784..701431(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_1093]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRFPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=527926 I6I50_RS03555 WP_125273538.1 700784..701431(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCTGGCATTCTTCAGCAAATTCGCTTCCCTAAAGTGCAAGCAATTGTTCCAATGCCGATTTCGAG
CCAGCGTTTAGCCGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGCTAAATGTGCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGGCGTGTTTTGATTTTGGATGATGTTGTGACCACAGG
CAGCTCCATTCAGGCACTGACTTTACAACTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.872

98.14

0.558
  comF Acinetobacter baumannii D1279779

56.872

98.14

0.558