Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I51_RS09770 Genome accession   NZ_CP068187
Coordinates   1860512..1861159 (+) Length   215 a.a.
NCBI ID   WP_201701681.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1843429..1862002 1860512..1861159 within 0


Gene organization within MGE regions


Location: 1843429..1862002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS09700 (I6I51_09705) - 1843859..1844803 (+) 945 WP_201701670.1 metal-dependent hydrolase -
  I6I51_RS09705 (I6I51_09710) - 1844860..1846119 (-) 1260 WP_201701672.1 dicarboxylate/amino acid:cation symporter -
  I6I51_RS09710 (I6I51_09715) - 1846350..1847222 (-) 873 WP_010327600.1 acyl-CoA thioesterase II -
  I6I51_RS09715 (I6I51_09720) plsB 1847514..1850087 (+) 2574 WP_201701675.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  I6I51_RS09720 (I6I51_09725) - 1850181..1850879 (-) 699 WP_125280260.1 hypothetical protein -
  I6I51_RS09725 (I6I51_09730) - 1850962..1851663 (+) 702 WP_125280261.1 type IV secretion protein Rhs -
  I6I51_RS09730 (I6I51_09735) - 1851694..1852305 (+) 612 WP_227556771.1 hypothetical protein -
  I6I51_RS09735 (I6I51_09740) - 1852481..1853266 (+) 786 WP_125280262.1 tetratricopeptide repeat protein -
  I6I51_RS09740 (I6I51_09745) - 1853560..1854528 (-) 969 WP_014538385.1 IS30 family transposase -
  I6I51_RS09745 (I6I51_09750) - 1854884..1855585 (-) 702 Protein_1841 IS1 family transposase -
  I6I51_RS09750 (I6I51_09755) - 1855789..1856292 (+) 504 Protein_1842 tetratricopeptide repeat protein -
  I6I51_RS09755 (I6I51_09760) - 1856729..1857430 (-) 702 WP_005005861.1 IS1 family transposase -
  I6I51_RS09760 (I6I51_09765) - 1857637..1858446 (-) 810 WP_125281019.1 NAD-dependent epimerase/dehydratase family protein -
  I6I51_RS09765 (I6I51_09770) recG 1858480..1860525 (+) 2046 WP_201701679.1 ATP-dependent DNA helicase RecG -
  I6I51_RS09770 (I6I51_09775) comF 1860512..1861159 (+) 648 WP_201701681.1 ComF family protein Machinery gene
  I6I51_RS09775 (I6I51_09780) - 1861160..1861564 (-) 405 WP_176538337.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24899.16 Da        Isoelectric Point: 9.6094

>NTDB_id=527896 I6I51_RS09770 WP_201701681.1 1860512..1861159(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_1094]
MPMFSHLLHTAKQLLHKAQPCHLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGQYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRLPKVQAIVPMPISTQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKISAACIAYALK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=527896 I6I51_RS09770 WP_201701681.1 1860512..1861159(+) (comF) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCCTATGTTTAGTCATTTACTGCACACCGCCAAACAGTTACTACACAAAGCACAGCCTTGCCACTTGTGTGGCATTGT
ACGCGCAGATCTGCACTCGGTCTGTTTGGACTGCTGGCAACAACTTCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTCGCAGGGCAGTATCAGTATCCTTTAGATCATTTGATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTACCTAAAGTACAAGCAATTGTCCCAATGCCGATTTCGAC
TCAGCGTTTAGCGGAACGTGGCTACAACCAATCAATGATCCTCGCCAAAGACTTAGCAAAGCAGTTAAATGTTCCCATTT
GGCAGCCTGTGATACGACTGCATCAACATTCGCAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGCCAGTATGCAAAACGCTACCGACGTGTTTTGATTTTGGATGATGTCGTGACCACAGG
CAGCTCGATTCAGGCACTGACTTTACAGCTTGAACAATTGGGTTGTCATAAAATCAGCGCCGCGTGTATTGCCTATGCAC
TAAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.278

90.233

0.535
  comF Acinetobacter baumannii D1279779

59.278

90.233

0.535