Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6I51_RS04075 Genome accession   NZ_CP068187
Coordinates   753105..753506 (-) Length   133 a.a.
NCBI ID   WP_201703536.1    Uniprot ID   A0AA42MV98
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 748105..758506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS04045 (I6I51_04035) tadA 748373..748861 (-) 489 WP_201703529.1 tRNA adenosine(34) deaminase TadA -
  I6I51_RS04050 (I6I51_04040) - 748867..749988 (-) 1122 WP_201703532.1 enoyl-CoA hydratase/isomerase family protein -
  I6I51_RS04055 (I6I51_04045) ung 749985..750698 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  I6I51_RS04060 (I6I51_04050) - 750740..751336 (-) 597 WP_125281127.1 6-carboxytetrahydropterin synthase -
  I6I51_RS04065 (I6I51_04055) gspK 751459..752409 (-) 951 WP_201703534.1 type II secretion system minor pseudopilin GspK -
  I6I51_RS04070 (I6I51_04060) xcpW 752488..753108 (-) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6I51_RS04075 (I6I51_04065) xcpV 753105..753506 (-) 402 WP_201703536.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6I51_RS04080 (I6I51_04070) - 753541..754110 (-) 570 WP_176537560.1 type II secretion system protein -
  I6I51_RS04085 (I6I51_04075) - 754123..754737 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  I6I51_RS04090 (I6I51_04080) - 754783..755556 (-) 774 WP_201703538.1 TatD family hydrolase -
  I6I51_RS04095 (I6I51_04085) - 755583..755924 (-) 342 WP_201703540.1 PilZ domain-containing protein -
  I6I51_RS04100 (I6I51_04090) - 755939..756922 (-) 984 WP_201703542.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  I6I51_RS04105 (I6I51_04095) kdsB 756942..757703 (-) 762 WP_125281121.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14557.77 Da        Isoelectric Point: 9.1249

>NTDB_id=527886 I6I51_RS04075 WP_201703536.1 753105..753506(-) (xcpV) [Acinetobacter johnsonii strain FDAARGOS_1094]
MKCHLINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSIAHAILRTKAQFVALNEISMMEINRDWLQGTASKQIIQQ
GETWQIDKSAQATISANVQRVNVQVSVVNPETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=527886 I6I51_RS04075 WP_201703536.1 753105..753506(-) (xcpV) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGAAATGCCATCTCATTAATCCTCGCTCAGGATTTACATTGTTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCCTTAACCAAAGTGGGTATGCAATATACTCAGTCTATAGCCCATGCCATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCATCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCGT
GGTGAATCCTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-109)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.504

87.97

0.647