Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   I6I51_RS04070 Genome accession   NZ_CP068187
Coordinates   752488..753108 (-) Length   206 a.a.
NCBI ID   WP_004984837.1    Uniprot ID   A0A7H8SFP9
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747488..758108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS04040 (I6I51_04030) - 747854..748285 (-) 432 WP_004696860.1 SRPBCC family protein -
  I6I51_RS04045 (I6I51_04035) tadA 748373..748861 (-) 489 WP_201703529.1 tRNA adenosine(34) deaminase TadA -
  I6I51_RS04050 (I6I51_04040) - 748867..749988 (-) 1122 WP_201703532.1 enoyl-CoA hydratase/isomerase family protein -
  I6I51_RS04055 (I6I51_04045) ung 749985..750698 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  I6I51_RS04060 (I6I51_04050) - 750740..751336 (-) 597 WP_125281127.1 6-carboxytetrahydropterin synthase -
  I6I51_RS04065 (I6I51_04055) gspK 751459..752409 (-) 951 WP_201703534.1 type II secretion system minor pseudopilin GspK -
  I6I51_RS04070 (I6I51_04060) xcpW 752488..753108 (-) 621 WP_004984837.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6I51_RS04075 (I6I51_04065) xcpV 753105..753506 (-) 402 WP_201703536.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6I51_RS04080 (I6I51_04070) - 753541..754110 (-) 570 WP_176537560.1 type II secretion system protein -
  I6I51_RS04085 (I6I51_04075) - 754123..754737 (-) 615 WP_114836892.1 TetR/AcrR family transcriptional regulator -
  I6I51_RS04090 (I6I51_04080) - 754783..755556 (-) 774 WP_201703538.1 TatD family hydrolase -
  I6I51_RS04095 (I6I51_04085) - 755583..755924 (-) 342 WP_201703540.1 PilZ domain-containing protein -
  I6I51_RS04100 (I6I51_04090) - 755939..756922 (-) 984 WP_201703542.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  I6I51_RS04105 (I6I51_04095) kdsB 756942..757703 (-) 762 WP_125281121.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23563.11 Da        Isoelectric Point: 5.3491

>NTDB_id=527885 I6I51_RS04070 WP_004984837.1 752488..753108(-) (xcpW) [Acinetobacter johnsonii strain FDAARGOS_1094]
MTKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPITANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=527885 I6I51_RS04070 WP_004984837.1 752488..753108(-) (xcpW) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGACAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTATTACGTGACACGGTGCAAATTGTACCAATTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTATAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CTGAAACCAGTGTTCTACTTGATTCAGTTGATCAATTTCAAATTATGCTACTCAATCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.706

97.573

0.573