Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   K7I17_RS08750 Genome accession   NZ_CP082279
Coordinates   1687230..1689815 (+) Length   861 a.a.
NCBI ID   WP_014470386.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Bam1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682230..1694815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7I17_RS08730 (K7I17_08730) - 1683034..1684209 (+) 1176 WP_014470387.1 glycine C-acetyltransferase -
  K7I17_RS08735 (K7I17_08735) miaB 1684352..1685881 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  K7I17_RS08740 (K7I17_08740) ymcA 1685884..1686315 (+) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  K7I17_RS08745 (K7I17_08745) cotE 1686569..1687114 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  K7I17_RS08750 (K7I17_08750) hexA 1687230..1689815 (+) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene
  K7I17_RS08755 (K7I17_08755) hexB 1689831..1691708 (+) 1878 WP_013352326.1 DNA mismatch repair endonuclease MutL Machinery gene
  K7I17_RS08760 (K7I17_08760) - 1692174..1692851 (+) 678 WP_013352327.1 MBL fold metallo-hydrolase -
  K7I17_RS08765 (K7I17_08765) fabD 1693156..1694025 (+) 870 WP_013352328.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 861 a.a.        Molecular weight: 97569.93 Da        Isoelectric Point: 5.4191

>NTDB_id=527877 K7I17_RS08750 WP_014470386.1 1687230..1689815(+) (hexA) [Bacillus amyloliquefaciens strain Bam1]
MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKIPMCGVPYHSAAAYIEQLIKK
GYKVAICEQTEDPKAAKGVVKREVVQLITPGTVMDGKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDV
MSEIYSVGAKEIVVSSKFNENTAAQLKERCGATISIEDGKMTDRIEIAKHLPGEELTETFMRLYTYLQKTQKRSLDHLQP
VQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLF
EREDLRERLKEVYDLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCGDLLDLLEDALHE
NPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFNKVFGYYIEVTKANLHLLEDGRYERK
QTLTNAERYITPELKEKEALILEAENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVF
SDNEVKVIEGRHPVVEKVMDSQEYVPNNCLMGESREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQ
IFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHEL
TVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELPAAPEKK
PVVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMYKLQKKLK

Nucleotide


Download         Length: 2586 bp        

>NTDB_id=527877 K7I17_RS08750 WP_014470386.1 1687230..1689815(+) (hexA) [Bacillus amyloliquefaciens strain Bam1]
ATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGCAGAATACCAAGATGCCTTTTTATTTTTTCGGCT
TGGTGACTTTTATGAAATGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTGACAAGCAGAGACG
GAGGATCGGCTGATAAAATTCCGATGTGCGGCGTGCCTTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAG
GGCTATAAAGTCGCGATCTGTGAGCAGACGGAAGATCCGAAGGCGGCCAAAGGCGTTGTCAAAAGAGAAGTCGTCCAGCT
GATCACACCGGGAACCGTGATGGACGGAAAAGGCATTCATGAGTCGGAAAACAATTTTATCGCTTCCGTTTCCGCATTTC
CTGGCGGATACGGCCTTGCTTTATCAGACTTAACGACTGGAGAAAACCTCGCCGTATTTATTGAACGGATTGAAGATGTC
ATGTCAGAAATTTATTCAGTCGGCGCAAAGGAAATTGTCGTATCAAGCAAGTTTAATGAAAATACAGCGGCCCAGCTGAA
AGAACGGTGCGGCGCAACGATTTCCATCGAAGACGGGAAAATGACAGACCGGATTGAAATCGCAAAGCACTTACCTGGCG
AAGAGCTGACAGAGACGTTTATGCGTTTATATACGTATTTGCAGAAAACGCAAAAACGGAGCCTGGATCACCTGCAGCCG
GTTCAAGTGTATGAATTGGAAGAAGCGATGAAAATTGATCTGTATTCAAAACGGAATCTTGAACTGACAGAAACGATTCG
TTCGAAAAGCAAAAAAGGGTCACTGCTCTGGCTTTTAGACGAGACGAAAACAGCAATGGGCGGCAGGCTCCTCAAACAAT
GGATTGACCGCCCGCTGATCAGGGCATCCCAAATCGAAGAACGTCAGGAAATGGTCGAGACGCTGATCAATCATCTGTTT
GAGCGTGAAGATCTGCGCGAACGCCTGAAGGAAGTGTATGATTTGGAGCGTCTTGCGGGCCGGGTCGCATTCGGAAACGT
CAATGCAAGGGATTTAATCCAGCTGAAAGAATCGTTAAAACAGGTGCCGAGCATTAAAGAGCTTGTCGGGTCTCTTAACC
ATAAAAAAGCAAAAGAACGCGCCGGCTTGATTGACCCGTGCGGAGATCTGCTTGACCTGTTAGAAGATGCGCTGCATGAA
AACCCGCCGTTATCTTTAAAGGAAGGCAACTTAATAAAAGACGGCTATCATCAGAAGCTTGATGAGTACCGTGACGCCAG
CAAAAACGGAAAAGACTGGATTGCCAGACTGGAGCAGCAGGAACGCGCGTATACAGGCATCCGTTCATTAAAGGTCGGCT
TTAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCATCTCCTTGAGGACGGGCGGTATGAGCGGAAG
CAGACGCTCACAAACGCCGAACGGTACATTACGCCGGAATTAAAGGAAAAAGAAGCGCTTATTTTAGAAGCGGAAAACAA
CATTTGCGAGCTGGAATATGAGCTTTTTGCCGGACTGCGTGAAAAGGTTAAGCAATTTATTCCGCGCCTGCAGCGTCTAG
CCAAGCAAATGAGTGAGCTCGACGCACTGCAATGCTTTGCCACGATCAGTGAAAACAGGCATTACACAAAGCCCGTCTTT
TCCGATAATGAGGTAAAAGTCATTGAAGGCAGACATCCTGTCGTTGAAAAGGTGATGGACAGTCAAGAATATGTGCCGAA
CAATTGCCTGATGGGCGAATCACGGGAAATGCTTTTGATTACGGGTCCGAATATGTCAGGTAAAAGCACGTACATGAGAC
AGATCGCACTTTTATCAATCATGGCCCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCAGTTCTGCCGATTTTTGATCAA
ATCTTTACGAGAATCGGGGCTGCGGACGATTTGATCTCCGGACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAA
CGCGATCGTAAACGCCACAAAAGACAGCCTGATCCTGTTCGATGAAATCGGACGCGGGACGTCAACGTATGACGGAATGG
CGCTGGCACAGGCGATTATTGAATATGTCCATGATCATATCGGCGCTAAAACACTGTTCAGCACGCATTATCATGAACTG
ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGCCGAGGAATATAACGGAACGGTCGTGTTTCT
CCATCAAATTAAAGAAGGAGCCGCCGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCCGAGCTCCCGGATGATCTGA
TCAGCCGCGCGCAGGAGATTCTGAAACAGCTAGAGCAGTCAGGAGATAAACCGGAGCTTCCGGCGGCACCTGAGAAAAAG
CCCGTCGTCAAGGAAGAACCGGCACAGCTGTCCTTTTTTGCAGACGGTGAAAAAGAACAGAAAGCACCGGCTGTTTCTCA
TAAAGAAAAACAAGTGCTTGAAGCCTTTAAGTCGATCAATATTCTTGATATGACGCCTCTTGAGGCGATGAATGAAATGT
ACAAGCTGCAAAAAAAATTAAAATAG

Domains

Predicted by InterProScan.

MutS family domain IV (MutS_IV)

(415-506)

MutS domain II (MutS_II)

(125-239)

MutS domain I (MutS_I)

(5-116)

MutS domain V (MutS_V)

(598-785)

MutS domain III (MutS_III)

(258-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

48.308

99.535

0.481
  mutS Pseudomonas stutzeri strain ATCC 17587

38.514

100

0.391