Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I52_RS14760 Genome accession   NZ_CP068180
Coordinates   3171721..3172377 (+) Length   218 a.a.
NCBI ID   WP_004985298.1    Uniprot ID   A0AA46NQL1
Organism   Acinetobacter ursingii strain FDAARGOS_1095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3166721..3177377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I52_RS14745 (I6I52_14745) - 3167760..3168746 (-) 987 WP_004985303.1 putative solute-binding protein -
  I6I52_RS14750 (I6I52_14750) - 3168817..3169650 (-) 834 WP_004985301.1 NAD-dependent epimerase/dehydratase family protein -
  I6I52_RS14755 (I6I52_14755) recG 3169689..3171734 (+) 2046 WP_004985300.1 ATP-dependent DNA helicase RecG -
  I6I52_RS14760 (I6I52_14760) comF 3171721..3172377 (+) 657 WP_004985298.1 ComF family protein Machinery gene
  I6I52_RS14765 (I6I52_14765) - 3172384..3172809 (-) 426 WP_004985294.1 NUDIX domain-containing protein -
  I6I52_RS14770 (I6I52_14770) - 3172825..3173409 (-) 585 WP_010588689.1 TIGR00730 family Rossman fold protein -
  I6I52_RS14775 (I6I52_14775) - 3173567..3174580 (+) 1014 WP_004985290.1 CorA family divalent cation transporter -
  I6I52_RS14780 (I6I52_14780) - 3174636..3174929 (-) 294 WP_004985287.1 lipid asymmetry maintenance protein MlaB -
  I6I52_RS14785 (I6I52_14785) - 3174943..3175575 (-) 633 WP_004985286.1 phospholipid-binding protein MlaC -
  I6I52_RS14790 (I6I52_14790) - 3175594..3176277 (-) 684 WP_004985284.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6I52_RS14795 (I6I52_14795) mlaE 3176277..3177056 (-) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25493.03 Da        Isoelectric Point: 9.1745

>NTDB_id=527868 I6I52_RS14760 WP_004985298.1 3171721..3172377(+) (comF) [Acinetobacter ursingii strain FDAARGOS_1095]
MLMFDDIKASMQQLGQKLLPCRLCESSPRLKHYVLCKSCWEQLPWLKQPIHRHELQIMAACYYDYPIDRILQQFKYEQKL
HHQPLLDQLLAQMKYPKVQAIVPMPISEARLIERGYNQSLLLAQQLAKKLNIPVWQPIHRLEQHSQKGLNRIERIQGIEQ
QFVLLEKPKIRYRKVLIIDDVVTTGSSIYALHQALHELGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=527868 I6I52_RS14760 WP_004985298.1 3171721..3172377(+) (comF) [Acinetobacter ursingii strain FDAARGOS_1095]
ATGCTTATGTTTGATGATATTAAAGCCTCCATGCAACAGCTTGGGCAAAAACTTTTACCCTGCCGTCTGTGTGAATCCAG
TCCACGTTTAAAGCATTATGTTCTATGTAAAAGTTGCTGGGAGCAATTGCCTTGGCTGAAACAGCCGATCCATCGGCATG
AATTACAGATCATGGCGGCCTGTTACTATGATTATCCGATCGATCGTATTTTACAGCAGTTTAAATACGAACAAAAATTA
CATCACCAACCCTTACTCGATCAACTCCTTGCCCAGATGAAATATCCTAAAGTTCAGGCGATTGTCCCCATGCCGATCTC
GGAGGCACGTTTGATCGAACGCGGTTATAATCAATCTTTGCTCTTGGCACAACAACTGGCAAAGAAACTCAATATTCCCG
TCTGGCAACCGATTCATCGACTTGAACAACATTCTCAAAAAGGACTGAATCGAATAGAGCGGATTCAAGGCATAGAACAG
CAGTTTGTTCTGTTAGAGAAACCCAAAATTCGCTACCGAAAAGTCTTGATCATTGATGACGTCGTCACGACTGGCAGCTC
AATTTATGCGTTGCATCAAGCATTACACGAATTAGGATGCCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.196

93.578

0.61
  comF Acinetobacter baumannii D1279779

64.706

93.578

0.606