Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6I53_RS06900 Genome accession   NZ_CP068176
Coordinates   1343840..1344496 (-) Length   218 a.a.
NCBI ID   WP_004995146.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain FDAARGOS_1096     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338840..1349496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I53_RS06865 (I6I53_06870) mlaE 1339160..1339939 (+) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  I6I53_RS06870 (I6I53_06875) - 1339939..1340622 (+) 684 WP_004995153.1 outer membrane lipid asymmetry maintenance protein MlaD -
  I6I53_RS06875 (I6I53_06880) - 1340641..1341273 (+) 633 WP_004985286.1 phospholipid-binding protein MlaC -
  I6I53_RS06880 (I6I53_06885) - 1341287..1341580 (+) 294 WP_004995150.1 lipid asymmetry maintenance protein MlaB -
  I6I53_RS06885 (I6I53_06890) - 1341637..1342650 (-) 1014 WP_004985290.1 CorA family divalent cation transporter -
  I6I53_RS06890 (I6I53_06895) - 1342808..1343392 (+) 585 WP_010588689.1 TIGR00730 family Rossman fold protein -
  I6I53_RS06895 (I6I53_06900) - 1343408..1343833 (+) 426 WP_004995148.1 NUDIX domain-containing protein -
  I6I53_RS06900 (I6I53_06905) comF 1343840..1344496 (-) 657 WP_004995146.1 ComF family protein Machinery gene
  I6I53_RS06905 (I6I53_06910) recG 1344483..1346528 (-) 2046 WP_004995145.1 ATP-dependent DNA helicase RecG -
  I6I53_RS06910 (I6I53_06915) - 1346567..1347400 (+) 834 WP_004995142.1 NAD-dependent epimerase/dehydratase family protein -
  I6I53_RS06915 (I6I53_06920) - 1347471..1348457 (+) 987 WP_004995139.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25428.94 Da        Isoelectric Point: 9.7999

>NTDB_id=527826 I6I53_RS06900 WP_004995146.1 1343840..1344496(-) (comF) [Acinetobacter ursingii strain FDAARGOS_1096]
MPMFDNIKASMQQLGQKLLPCRLCESSPRLKHYVLCKSCWQQLPWLKQPIHRHELQIMAACYYHYPIDRILQQFKYEQKL
HHQPLLDQLLAQVRHPKVQAIVPMPISDARLIERGYNQSLLLAQQLAKKLNVPIWQPIHRLEQHSQKGLNRLERIQGIEQ
QFVVLEKPKIRYRKVLIIDDVVTTGSSIYALHQALQQLGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=527826 I6I53_RS06900 WP_004995146.1 1343840..1344496(-) (comF) [Acinetobacter ursingii strain FDAARGOS_1096]
ATGCCTATGTTTGATAATATTAAAGCCTCCATGCAACAGCTTGGGCAAAAACTTTTACCCTGCCGTCTGTGTGAATCCAG
TCCACGTTTAAAGCATTATGTTCTATGTAAAAGTTGCTGGCAGCAATTGCCTTGGCTGAAACAACCGATCCATCGGCATG
AATTACAGATCATGGCGGCTTGTTATTATCATTATCCAATTGATCGTATTTTGCAGCAGTTTAAATATGAACAGAAATTA
CATCATCAGCCTTTATTAGATCAATTACTTGCTCAAGTTAGGCATCCTAAAGTTCAAGCTATTGTCCCAATGCCGATTTC
AGACGCACGTTTAATTGAACGAGGTTACAATCAGTCCTTGCTCTTGGCACAACAACTTGCAAAAAAGCTAAATGTTCCTA
TTTGGCAGCCTATTCATCGACTAGAACAACACTCTCAAAAGGGACTCAATCGGCTTGAACGAATTCAAGGTATTGAGCAA
CAGTTTGTAGTGTTAGAAAAACCCAAAATTCGCTACAGAAAAGTCTTGATCATCGATGATGTCGTCACGACTGGCAGCTC
AATTTATGCCTTGCATCAAGCGTTACAACAATTAGGATGTCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.216

93.578

0.601
  comF Acinetobacter baumannii D1279779

63.725

93.578

0.596