Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I6I58_RS07105 Genome accession   NZ_CP068172
Coordinates   1359992..1360759 (+) Length   255 a.a.
NCBI ID   WP_012661653.1    Uniprot ID   B9KCI1
Organism   Campylobacter lari strain FDAARGOS_1101     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1354992..1365759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I58_RS07090 (I6I58_07090) - 1355864..1357804 (-) 1941 WP_012661656.1 ribonuclease R family protein -
  I6I58_RS07095 (I6I58_07095) ilvC 1357914..1358936 (+) 1023 WP_012661655.1 ketol-acid reductoisomerase -
  I6I58_RS07100 (I6I58_07100) - 1358947..1360005 (+) 1059 WP_074691908.1 divergent polysaccharide deacetylase family protein -
  I6I58_RS07105 (I6I58_07105) dprA 1359992..1360759 (+) 768 WP_012661653.1 DNA-processing protein DprA Machinery gene
  I6I58_RS07110 (I6I58_07110) ruvX 1360756..1361142 (+) 387 WP_012661652.1 Holliday junction resolvase RuvX -
  I6I58_RS07115 (I6I58_07115) - 1361129..1362022 (+) 894 WP_012661651.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  I6I58_RS07120 (I6I58_07120) rpsO 1362211..1362483 (-) 273 WP_012661650.1 30S ribosomal protein S15 -
  I6I58_RS07125 (I6I58_07125) - 1362659..1363063 (+) 405 WP_012661649.1 Rrf2 family transcriptional regulator -
  I6I58_RS07130 (I6I58_07130) flhA 1363056..1365215 (+) 2160 WP_012661648.1 flagellar biosynthesis protein FlhA -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28690.35 Da        Isoelectric Point: 6.8615

>NTDB_id=527784 I6I58_RS07105 WP_012661653.1 1359992..1360759(+) (dprA) [Campylobacter lari strain FDAARGOS_1101]
MKFIENIEDFKNLLNPPSKIYYKGNLELLNARKVAVIGSRKMSVYTKNCLIELVSLLKKAKVCVVSGGALGVDIQAAKIA
YPQTIAIFANGLDEIYPKANTNEILNIYENALALSENEGNYKAKPYDFLLRNRLIIALSEVVIIAQADLKSGSMQSARLA
LGMNKPIYVLPHRKNESEGTNLLLATKKANLIHDFDEFVKMFGELHYEQSEDDLLSFLKHEDDLEKVLKKFGDRVYEYEL
EGLVEISGVKIRACI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=527784 I6I58_RS07105 WP_012661653.1 1359992..1360759(+) (dprA) [Campylobacter lari strain FDAARGOS_1101]
ATGAAATTTATTGAAAATATTGAGGATTTTAAAAATCTTTTAAATCCGCCTTCAAAGATTTATTATAAGGGCAACTTAGA
ACTTTTAAATGCTAGAAAAGTAGCTGTTATAGGTTCTAGAAAAATGAGTGTTTATACTAAAAATTGCCTCATTGAGTTAG
TATCTTTGTTAAAAAAAGCTAAGGTTTGTGTGGTAAGCGGTGGGGCTTTGGGGGTGGATATTCAAGCAGCTAAAATAGCT
TACCCTCAAACTATAGCTATATTTGCTAATGGGCTTGATGAGATTTATCCAAAAGCAAATACAAATGAAATTTTAAATAT
TTATGAAAATGCTTTAGCCTTAAGTGAAAACGAAGGAAATTACAAGGCAAAACCCTATGATTTTTTATTAAGAAATAGAC
TTATTATTGCTTTAAGTGAGGTTGTTATAATAGCTCAAGCTGATTTAAAAAGCGGCTCTATGCAAAGTGCAAGACTTGCT
TTAGGTATGAATAAACCTATATATGTATTACCTCATAGGAAAAATGAAAGTGAAGGGACAAATTTGCTTTTAGCCACAAA
AAAGGCAAATTTAATTCATGATTTTGATGAGTTTGTAAAAATGTTTGGAGAGCTTCATTATGAGCAAAGTGAAGATGATT
TATTAAGTTTTTTAAAACATGAAGATGATTTGGAAAAAGTTTTAAAAAAATTTGGTGATAGAGTTTATGAATATGAGCTT
GAGGGTTTGGTAGAGATATCTGGAGTGAAAATAAGAGCTTGTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9KCI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.207

90.98

0.557
  dprA Helicobacter pylori 26695

45.161

97.255

0.439