Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   K7B13_RS08255 Genome accession   NZ_CP082278
Coordinates   1634286..1636871 (+) Length   861 a.a.
NCBI ID   WP_115997807.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1629286..1641871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS08235 (K7B13_08235) - 1630091..1631266 (+) 1176 WP_065981487.1 glycine C-acetyltransferase -
  K7B13_RS08240 (K7B13_08240) miaB 1631409..1632938 (+) 1530 WP_065981488.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  K7B13_RS08245 (K7B13_08245) ymcA 1632941..1633372 (+) 432 WP_065981489.1 RicAFT regulatory complex protein RicA family protein Regulator
  K7B13_RS08250 (K7B13_08250) cotE 1633625..1634170 (+) 546 WP_065981490.1 outer spore coat protein CotE -
  K7B13_RS08255 (K7B13_08255) hexA 1634286..1636871 (+) 2586 WP_115997807.1 DNA mismatch repair protein MutS Machinery gene
  K7B13_RS08260 (K7B13_08260) hexB 1636887..1638764 (+) 1878 WP_115997262.1 DNA mismatch repair endonuclease MutL Machinery gene
  K7B13_RS08265 (K7B13_08265) - 1638816..1639931 (-) 1116 WP_212101404.1 site-specific integrase -
  K7B13_RS08270 (K7B13_08270) - 1640047..1640872 (+) 826 Protein_1585 DNA adenine methylase -
  K7B13_RS08275 (K7B13_08275) - 1640988..1641506 (-) 519 WP_065981493.1 hypothetical protein -

Sequence


Protein


Download         Length: 861 a.a.        Molecular weight: 97524.93 Da        Isoelectric Point: 5.5611

>NTDB_id=527730 K7B13_RS08255 WP_115997807.1 1634286..1636871(+) (hexA) [Bacillus amyloliquefaciens strain 35M]
MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKIPMCGVPYHSAAAYIEQLIKK
GYKVAICEQTEDPKAAKGVVKREVVQLITPGTVMDGKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDV
MSEIYSVGAKEIVVSSKFNENTAAQLKERCGATISIEDGKMTERIEIAKHLPGEELTETFMRLYTYLQKTQKRSLDHLQP
VQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLF
EREDLRERLKEVYDLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCGDLLDLLEDALHE
NPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFNKVFGYYIEVTKANLHLLEDGRYERK
QTLTNAERYITPELKEKEALILEAENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVF
SDNEVKVIEGRHPVVEKVMDSQEYVPNNCLMGESREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQ
IFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHEL
TVLEDKLPQLKNVHVRAEEYNGKVVFLHQIKEGAADKSYGIHVAQLAELPGDLISRAQEILKQLEQSGDKPELPAAPEKK
PAVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMYKLQKKLK

Nucleotide


Download         Length: 2586 bp        

>NTDB_id=527730 K7B13_RS08255 WP_115997807.1 1634286..1636871(+) (hexA) [Bacillus amyloliquefaciens strain 35M]
ATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGCAGAATACCAAGATGCCTTTTTATTTTTTCGGCT
TGGTGACTTTTATGAAATGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTGACAAGCAGGGACG
GAGGATCGGCTGATAAAATTCCGATGTGCGGCGTGCCGTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAG
GGCTATAAAGTGGCGATCTGTGAACAGACCGAAGATCCGAAGGCGGCCAAAGGCGTTGTCAAAAGAGAAGTCGTCCAGCT
GATCACACCGGGAACCGTGATGGACGGAAAAGGCATTCATGAGTCGGAAAACAATTTTATCGCTTCCGTTTCCGCATTTC
CTGGCGGATACGGCCTCGCTTTATCAGACTTAACGACTGGAGAAAACCTGGCCGTATTTATTGAACGGATTGAAGATGTC
ATGTCAGAAATTTATTCAGTCGGCGCAAAGGAAATTGTCGTATCAAGCAAGTTTAATGAAAATACAGCGGCCCAGCTGAA
AGAACGGTGCGGCGCAACGATTTCCATCGAAGACGGGAAAATGACAGAACGGATTGAAATCGCAAAGCACTTGCCTGGCG
AAGAGCTGACAGAGACGTTTATGCGTTTATATACGTATTTGCAGAAAACGCAAAAACGGAGCCTGGATCACCTGCAGCCG
GTTCAAGTATATGAATTGGAAGAAGCGATGAAAATTGATCTGTATTCAAAACGGAATCTTGAACTGACGGAAACGATCCG
TTCGAAAAGCAAAAAAGGATCACTGCTCTGGCTTTTGGACGAGACGAAAACAGCAATGGGCGGCAGGCTCCTCAAACAAT
GGATTGACCGCCCGCTGATCAGGGCATCCCAAATCGAAGAACGTCAGGAAATGGTCGAGACGCTGATCAATCATCTGTTT
GAGCGTGAAGATTTGCGCGAACGCTTGAAAGAAGTGTATGATTTGGAGCGTCTTGCGGGCCGGGTCGCATTCGGAAACGT
CAATGCAAGGGATTTAATCCAGCTGAAAGAATCGTTAAAACAGGTGCCGAGCATTAAAGAGCTTGTAGGGTCTCTTAACC
ATAAAAAAGCAAAAGAACGCGCCGGCTTGATTGACCCGTGCGGAGATCTGCTTGACCTGTTAGAAGATGCGCTGCATGAA
AACCCGCCGTTATCTTTAAAGGAAGGCAACTTAATAAAAGACGGCTATCATCAGAAACTCGATGAGTACCGTGACGCCAG
CAAAAACGGCAAAGACTGGATTGCCAGACTGGAGCAGCAGGAGCGTGCGTATACGGGCATCCGTTCATTAAAGGTTGGCT
TTAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCATCTCCTTGAGGACGGGCGGTATGAGCGGAAG
CAGACGCTCACAAACGCTGAACGGTACATTACGCCGGAATTAAAGGAAAAAGAAGCGCTTATTTTAGAAGCGGAAAACAA
CATTTGCGAGCTGGAATATGAGCTTTTTGCCGGACTGCGTGAAAAGGTTAAGCAATTTATTCCGCGCCTGCAGCGTCTAG
CCAAGCAAATGAGTGAGCTGGACGCACTGCAATGCTTTGCAACGATCAGTGAAAACAGGCATTACACAAAGCCCGTCTTT
TCCGATAATGAGGTAAAAGTCATTGAAGGCAGACATCCTGTCGTTGAAAAGGTGATGGACAGTCAAGAATACGTGCCGAA
CAATTGCCTGATGGGCGAATCACGGGAAATGCTCCTGATTACGGGTCCGAATATGTCAGGTAAAAGCACGTACATGAGAC
AGATCGCACTTTTATCAATCATGGCCCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCGGTTCTGCCGATTTTTGATCAA
ATCTTTACGAGAATCGGGGCTGCGGACGATTTGATTTCCGGACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAA
CGCGATTGTAAACGCCACAAAAGACAGCCTGATCCTGTTCGATGAAATCGGACGCGGGACATCAACGTATGACGGAATGG
CGCTGGCACAGGCAATCATTGAATATGTCCATGATCATATCGGCGCTAAAACACTGTTCAGCACGCACTATCATGAACTG
ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGCCGAGGAATATAACGGAAAGGTCGTGTTTCT
CCATCAAATCAAAGAAGGAGCCGCCGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCTGAGCTCCCGGGTGATCTGA
TCAGCCGCGCGCAGGAGATTCTGAAACAGCTTGAGCAGTCAGGAGATAAACCGGAGCTTCCGGCGGCACCTGAGAAAAAG
CCCGCCGTCAAGGAAGAACCGGCACAGCTGTCCTTTTTTGCAGACGGTGAAAAAGAACAGAAAGCACCGGCTGTTTCTCA
TAAAGAAAAACAAGTGCTTGAAGCATTTAAGTCGATCAATATTCTTGATATGACGCCTCTTGAGGCGATGAATGAAATGT
ACAAGCTGCAAAAAAAATTAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

48.308

99.535

0.481

  mutS Pseudomonas stutzeri strain ATCC 17587

38.629

100

0.393