Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   K7B13_RS08245 Genome accession   NZ_CP082278
Coordinates   1632941..1633372 (+) Length   143 a.a.
NCBI ID   WP_065981489.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627941..1638372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS08225 (K7B13_08225) spoVS 1628513..1628773 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  K7B13_RS08230 (K7B13_08230) tdh 1629030..1630076 (+) 1047 WP_115997261.1 L-threonine 3-dehydrogenase -
  K7B13_RS08235 (K7B13_08235) - 1630091..1631266 (+) 1176 WP_065981487.1 glycine C-acetyltransferase -
  K7B13_RS08240 (K7B13_08240) miaB 1631409..1632938 (+) 1530 WP_065981488.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  K7B13_RS08245 (K7B13_08245) ymcA 1632941..1633372 (+) 432 WP_065981489.1 RicAFT regulatory complex protein RicA family protein Regulator
  K7B13_RS08250 (K7B13_08250) cotE 1633625..1634170 (+) 546 WP_065981490.1 outer spore coat protein CotE -
  K7B13_RS08255 (K7B13_08255) hexA 1634286..1636871 (+) 2586 WP_115997807.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16102.21 Da        Isoelectric Point: 5.0213

>NTDB_id=527729 K7B13_RS08245 WP_065981489.1 1632941..1633372(+) (ymcA) [Bacillus amyloliquefaciens strain 35M]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQTEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=527729 K7B13_RS08245 WP_065981489.1 1632941..1633372(+) (ymcA) [Bacillus amyloliquefaciens strain 35M]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATCCCGATCATTCAGGAATTCAGAGATTCCCAGACTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
TACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923