Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   K7B13_RS07270 Genome accession   NZ_CP082278
Coordinates   1428579..1429601 (+) Length   340 a.a.
NCBI ID   WP_212101258.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423579..1434601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS07235 (K7B13_07235) - 1423938..1424177 (+) 240 WP_003154475.1 YlbE-like family protein -
  K7B13_RS07240 (K7B13_07240) ylbF 1424249..1424698 (+) 450 WP_065981388.1 YlbF family regulator Regulator
  K7B13_RS07245 (K7B13_07245) - 1424757..1425029 (+) 273 WP_013352153.1 YlbG family protein -
  K7B13_RS07250 (K7B13_07250) rsmD 1425328..1425882 (+) 555 WP_065981389.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K7B13_RS07255 (K7B13_07255) coaD 1425887..1426369 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  K7B13_RS07260 (K7B13_07260) ylbJ 1426387..1427616 (-) 1230 WP_212101252.1 sporulation integral membrane protein YlbJ -
  K7B13_RS07265 (K7B13_07265) - 1427794..1428573 (+) 780 WP_212101255.1 patatin-like phospholipase family protein -
  K7B13_RS07270 (K7B13_07270) sepM 1428579..1429601 (+) 1023 WP_212101258.1 SepM family pheromone-processing serine protease Regulator
  K7B13_RS07275 (K7B13_07275) - 1429620..1430867 (-) 1248 WP_212101260.1 nucleotidyltransferase -
  K7B13_RS07280 (K7B13_07280) - 1431075..1431593 (+) 519 WP_065981393.1 DUF177 domain-containing protein -
  K7B13_RS07285 (K7B13_07285) rpmF 1431615..1431794 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  K7B13_RS07290 (K7B13_07290) gerR 1431951..1432526 (+) 576 WP_013352160.1 sporulation-specific transcriptional regulator GerR -
  K7B13_RS07295 (K7B13_07295) - 1432567..1433049 (-) 483 WP_013352161.1 N-acetyltransferase -
  K7B13_RS07300 (K7B13_07300) - 1433212..1434093 (+) 882 WP_249199301.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37492.28 Da        Isoelectric Point: 9.5435

>NTDB_id=527717 K7B13_RS07270 WP_212101258.1 1428579..1429601(+) (sepM) [Bacillus amyloliquefaciens strain 35M]
MKAKHFRWVFIILILLIAITFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGETDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIYASSVVSNMPAKGKLKVGDKIISADGKKYES
AEKLIDYISSKKAGEKVTFNIERDTKEKTVILKLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDKLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=527717 K7B13_RS07270 WP_212101258.1 1428579..1429601(+) (sepM) [Bacillus amyloliquefaciens strain 35M]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTATTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGGGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAGGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAAACTGATTCAGACTATATGAAGCGCCAGCTGCAGATGATGAAAAGCTCTCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGCAAACAGGTAAAATACTCATTTAACGGCATTTACGCCAGCTCAG
TCGTCTCCAATATGCCGGCAAAAGGAAAATTAAAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAAAATATGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTAACATTGAACGTGACACGAAAGA
AAAGACCGTTATCCTTAAGCTGAAATCATTCCCGGACGATCCGAAAAGAGCCGGAATCGGCGTAGCGTTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCCGGTCTCATGATGTCTTTG
GAAATTTACAATCAGCTGACAAAACCTGACGAAACAAAAGGCTACAATATAGCCGGAACGGGAACAATCGACGTTGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ACCAAAACGGAGCTGAAAACTCTGATTATAAAAATGCAGTAAAAACGGCGAAAGCAATAAAGTCTGATATGAAAATCGTT
CCTGTCGATACGATGCAGGACGCACTTGATTATTTGGATAAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(109-218)

PDZ domain (PDZ_2)

(127-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.017

100

0.397