Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   K7B13_RS07240 Genome accession   NZ_CP082278
Coordinates   1424249..1424698 (+) Length   149 a.a.
NCBI ID   WP_065981388.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419249..1429698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS07200 (K7B13_07200) ctaE 1419370..1419993 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  K7B13_RS07205 (K7B13_07205) ctaF 1419996..1420328 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  K7B13_RS07210 (K7B13_07210) ctaG 1420353..1421237 (+) 885 WP_212101240.1 cytochrome c oxidase assembly factor CtaG -
  K7B13_RS07215 (K7B13_07215) - 1421271..1421630 (-) 360 WP_212101243.1 YugN family protein -
  K7B13_RS07220 (K7B13_07220) - 1421771..1422214 (+) 444 WP_212101246.1 CBS domain-containing protein -
  K7B13_RS07225 (K7B13_07225) - 1422299..1423339 (+) 1041 WP_212101249.1 CAP domain-containing protein -
  K7B13_RS07230 (K7B13_07230) - 1423512..1423922 (+) 411 WP_065981387.1 YlbD family protein -
  K7B13_RS07235 (K7B13_07235) - 1423938..1424177 (+) 240 WP_003154475.1 YlbE-like family protein -
  K7B13_RS07240 (K7B13_07240) ylbF 1424249..1424698 (+) 450 WP_065981388.1 YlbF family regulator Regulator
  K7B13_RS07245 (K7B13_07245) - 1424757..1425029 (+) 273 WP_013352153.1 YlbG family protein -
  K7B13_RS07250 (K7B13_07250) rsmD 1425328..1425882 (+) 555 WP_065981389.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K7B13_RS07255 (K7B13_07255) coaD 1425887..1426369 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  K7B13_RS07260 (K7B13_07260) ylbJ 1426387..1427616 (-) 1230 WP_212101252.1 sporulation integral membrane protein YlbJ -
  K7B13_RS07265 (K7B13_07265) - 1427794..1428573 (+) 780 WP_212101255.1 patatin-like phospholipase family protein -
  K7B13_RS07270 (K7B13_07270) sepM 1428579..1429601 (+) 1023 WP_212101258.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16890.98 Da        Isoelectric Point: 4.8089

>NTDB_id=527716 K7B13_RS07240 WP_065981388.1 1424249..1424698(+) (ylbF) [Bacillus amyloliquefaciens strain 35M]
MYATIESVRLQSEAEQLAGMILQSETAENYRDCYKRLQEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=527716 K7B13_RS07240 WP_065981388.1 1424249..1424698(+) (ylbF) [Bacillus amyloliquefaciens strain 35M]
ATGTATGCAACAATTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCACTGCTTGACGAGAT
CAGCATCGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

89.262

100

0.893