Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   I6I43_RS11035 Genome accession   NZ_CP068143
Coordinates   2222013..2222582 (-) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_1086     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2217013..2227582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I43_RS10995 (I6I43_10995) - 2217487..2218095 (-) 609 WP_023913388.1 class I SAM-dependent methyltransferase -
  I6I43_RS11000 (I6I43_11000) rplL 2218270..2218638 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  I6I43_RS11005 (I6I43_11005) rplJ 2218681..2219181 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  I6I43_RS11010 (I6I43_11010) rplA 2219453..2220145 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  I6I43_RS11015 (I6I43_11015) rplK 2220353..2220775 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  I6I43_RS11020 (I6I43_11020) nusG 2220956..2221504 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  I6I43_RS11025 (I6I43_11025) secE 2221517..2221699 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  I6I43_RS11030 (I6I43_11030) rpmG 2221755..2221898 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  I6I43_RS11035 (I6I43_11035) sigH 2222013..2222582 (-) 570 WP_045176736.1 sigma-70 family RNA polymerase sigma factor Regulator
  I6I43_RS11040 (I6I43_11040) - 2222663..2223187 (-) 525 WP_000664738.1 NYN domain-containing protein -
  I6I43_RS11045 (I6I43_11045) rlmB 2223187..2223933 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6I43_RS11050 (I6I43_11050) - 2223941..2224345 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  I6I43_RS11055 (I6I43_11055) cysS 2224338..2225738 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  I6I43_RS11060 (I6I43_11060) cysE 2225722..2226369 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=527517 I6I43_RS11035 WP_045176736.1 2222013..2222582(-) (sigH) [Staphylococcus aureus strain FDAARGOS_1086]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=527517 I6I43_RS11035 WP_045176736.1 2222013..2222582(-) (sigH) [Staphylococcus aureus strain FDAARGOS_1086]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979