Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K6969_RS09675 Genome accession   NZ_CP082205
Coordinates   2010474..2011091 (+) Length   205 a.a.
NCBI ID   WP_321537399.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005474..2016091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS09650 (K6969_09545) - 2006302..2007738 (-) 1437 WP_029174107.1 cell division site-positioning protein MapZ family protein -
  K6969_RS09655 (K6969_09550) - 2007748..2008905 (-) 1158 WP_171943016.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  K6969_RS09665 (K6969_09560) gpsB 2009467..2009802 (-) 336 WP_024379573.1 cell division regulator GpsB -
  K6969_RS09670 (K6969_09565) - 2009869..2010408 (-) 540 WP_004195215.1 DUF1273 domain-containing protein -
  K6969_RS09675 (K6969_09570) recU 2010474..2011091 (+) 618 WP_321537399.1 Holliday junction resolvase RecU Machinery gene
  K6969_RS09680 (K6969_09575) pbp1a 2011072..2013246 (+) 2175 WP_216661470.1 penicillin-binding protein PBP1A -
  K6969_RS09685 (K6969_09580) rsmG 2013305..2014018 (+) 714 WP_171943018.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  K6969_RS09690 (K6969_09585) - 2014377..2014580 (-) 204 WP_014637517.1 cold-shock protein -
  K6969_RS09695 (K6969_09590) - 2014818..2015676 (+) 859 Protein_1889 IS630 family transposase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23782.37 Da        Isoelectric Point: 9.9440

>NTDB_id=527376 K6969_RS09675 WP_321537399.1 2010474..2011091(+) (recU) [Streptococcus suis strain AKJ18]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVINKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=527376 K6969_RS09675 WP_321537399.1 2010474..2011091(+) (recU) [Streptococcus suis strain AKJ18]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTAACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTTAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.241

97.073

0.468