Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   K6969_RS06620 Genome accession   NZ_CP082205
Coordinates   1365104..1367089 (-) Length   661 a.a.
NCBI ID   WP_029173655.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360104..1372089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS06595 (K6969_06495) - 1360500..1361309 (-) 810 WP_079270353.1 transporter substrate-binding domain-containing protein -
  K6969_RS06600 (K6969_06500) - 1361510..1361977 (-) 468 WP_029174397.1 8-oxo-dGTP diphosphatase -
  K6969_RS06605 (K6969_06505) - 1361970..1362473 (-) 504 WP_029174396.1 GNAT family N-acetyltransferase -
  K6969_RS06610 (K6969_06510) - 1362581..1363003 (-) 423 WP_029174395.1 YSIRK signal domain/LPXTG anchor domain surface protein -
  K6969_RS06615 (K6969_06515) - 1363521..1364723 (-) 1203 WP_321537504.1 IS110 family transposase -
  K6969_RS06620 (K6969_06520) uvrB 1365104..1367089 (-) 1986 WP_029173655.1 excinuclease ABC subunit UvrB Machinery gene
  K6969_RS06625 (K6969_06525) - 1367287..1369485 (+) 2199 WP_029173654.1 ABC transporter substrate-binding protein/permease -
  K6969_RS06630 (K6969_06530) - 1369485..1370225 (+) 741 WP_029943341.1 amino acid ABC transporter ATP-binding protein -
  K6969_RS06635 (K6969_06535) - 1370254..1370748 (-) 495 WP_171942504.1 adenylate kinase -
  K6969_RS06640 (K6969_06540) - 1370745..1371236 (-) 492 WP_171942503.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75561.61 Da        Isoelectric Point: 4.6375

>NTDB_id=527356 K6969_RS06620 WP_029173655.1 1365104..1367089(-) (uvrB) [Streptococcus suis strain AKJ18]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMDETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKKEVVDFNALNKDERKAIIKKLEGQMQEAA
EVLDFELAAQIRDMVIELKNM

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=527356 K6969_RS06620 WP_029173655.1 1365104..1367089(-) (uvrB) [Streptococcus suis strain AKJ18]
ATGATTAATCGAAATACTGAAAACCAATTTAAACTTGTGTCAAAATATGCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTTGATAATATCGAGGGGGGCGAAAAAGCCCAGATTCTCATGGGGGCGACTGGTACTGGTAAGACCTACACCA
TGAGTCAGGTCATTGCCCGTGTCAATAAGCCCACTCTGGTTATCGCCCACAACAAGACCTTGGCTGGTCAGCTTTATAGT
GAGTTCAAAGAGTTCTTCCCAGAAAATGCGGTAGAATACTTCGTGTCCTACTACGATTACTACCAGCCCGAAGCCTATGT
CCCGTCCAGCGATACCTATATTGAGAAGGATAGCTCGGTCAATGATGAGATTGACAAACTCCGTCACTCAGCAACCTCAG
CCCTGCTGGAGCGAAACGATGTTATTGTTGTAGCTTCGGTTTCTTGTATCTATGGTTTGGGTTCGCCCAAGGAATATTCT
GACAGCGTGGTCAGTCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTGCTCAATTCTCTGGTAGATATCCAGTTTGA
GCGCAACGACATTGACTTCCAACGGGGACGGTTCCGTGTGCGTGGGGATGTAGTAGAAGTCTTTCCAGCCTCCCGTGACG
AACACGCCTTCCGTGTGGAGTTTTTCGGGGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACTGGTAAGGTTTTG
GGCGATGTGGATCACTTGGCCATTTTCCCTGCCACCCACTTCGTGACCAACGATGACCACATGGAAACGGCTATTGCCAA
GATTCAGGCGGAACTGGAAGAGCAGCTCAAGGTCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GAACCGACTACGACATCGAGATGCTTCGGGAAATGGGTTACACCAACGGAGTTGAGAACTATTCACGACACATGGACGGG
CGAAGCGAGGGCGAGCCTCCGTACACACTGCTGGACTTTTTCCCTGAAGACTACCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGTATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGTTTCCGCCTCC
CGAGTGCACTGGATAATCGTCCGCTGCGCAGGGAAGAATTTGAGAGCCATGTCCACCAGATTGTCTATGTATCTGCGACG
CCGGGTGACTATGAAATGGAGCAGACAGAGACCGTTGTCGAGCAGATTATTCGGCCGACAGGGCTTTTGGATCCAGAGGT
GGAAGTCCGTCCAACCATGGGCCAAATGGACGACCTTTTAGGTGAAATCAATGCCCGTGTTGAAAAAGGCGAGCGGACCT
TTATTACCACCCTGACCAAGAAAATGGCAGAGGACTTGACCGACTATCTTAAAGAAATGGGTGTCAAGGTCAAGTATATG
CATTCGGACATCAAGACCTTGGAGCGGACGGAGATTATCCGTGATTTGCGTTTGGGTGTCTTTGATGTCTTGATAGGGAT
TAACCTCTTGCGTGAAGGGATTGACGTGCCAGAAGTTAGTCTGGTGGCTATTCTAGATGCTGACAAGGAAGGCTTCCTCC
GTAATGAACGGGGGCTCATACAGACTATTGGTCGGGCAGCTCGTAACTCTGAAGGTCATGTGATTATGTATGCGGACAAG
GTCACCGAGTCCATGCGCAAGGCTATGGACGAAACAGCCCGCCGCCGTCAAATCCAGATGGCTTATAATGAGGAGCATGG
AATTATTCCACAGACCATTAAGAAAGAGATCCGTGACCTGATAAGCGTGACTAAGGCTGTCACTCAGGACAAGAAAGAAG
TGGTGGACTTCAATGCTCTTAATAAAGATGAACGTAAGGCTATAATCAAGAAACTGGAAGGTCAAATGCAGGAAGCAGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGTGATATGGTCATTGAGTTGAAGAATATGTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(627-660)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

91.225

100

0.912
  uvrB Streptococcus pneumoniae D39

91.225

100

0.912
  uvrB Streptococcus pneumoniae TIGR4

91.074

100

0.911