Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   K6974_RS10870 Genome accession   NZ_CP082204
Coordinates   2177147..2178187 (-) Length   346 a.a.
NCBI ID   WP_222337057.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 2172147..2183187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS10845 (K6974_10735) nusA 2172209..2173351 (-) 1143 WP_222336726.1 transcription termination factor NusA -
  K6974_RS10850 (K6974_10740) rimP 2173425..2173895 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  K6974_RS10855 (K6974_10745) - 2174213..2175502 (+) 1290 WP_222337543.1 IS4 family transposase -
  K6974_RS10860 (K6974_10750) trmB 2175668..2176306 (-) 639 WP_222337058.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6974_RS10865 (K6974_10755) ccrZ 2176303..2177097 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  K6974_RS10870 (K6974_10760) pptB 2177147..2178187 (-) 1041 WP_222337057.1 ABC transporter permease Regulator
  K6974_RS10875 (K6974_10765) pptA 2178184..2178918 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  K6974_RS10880 (K6974_10770) - 2178981..2179394 (+) 414 WP_029179279.1 HIT family protein -
  K6974_RS10885 (K6974_10775) - 2179396..2179725 (+) 330 WP_029187511.1 hypothetical protein -
  K6974_RS10890 (K6974_10780) - 2180141..2181334 (-) 1194 WP_222337056.1 LCP family protein -
  K6974_RS10895 (K6974_10785) - 2181331..2181858 (-) 528 WP_024376436.1 GNAT family N-acetyltransferase -
  K6974_RS10900 (K6974_10790) tsaE 2181851..2182291 (-) 441 WP_032511687.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40195.57 Da        Isoelectric Point: 10.1278

>NTDB_id=527283 K6974_RS10870 WP_222337057.1 2177147..2178187(-) (pptB) [Streptococcus suis strain FJSM5]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYVTQLYPLEKDSKKIGLQNLLRVILYSLLLLELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=527283 K6974_RS10870 WP_222337057.1 2177147..2178187(-) (pptB) [Streptococcus suis strain FJSM5]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGCTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACCTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTAGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATGTAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGCTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465

  pptB Streptococcus thermophilus LMD-9

45.17

100

0.46