Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K6972_RS10450 Genome accession   NZ_CP082203
Coordinates   2165604..2166698 (+) Length   364 a.a.
NCBI ID   WP_105136699.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2160604..2171698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS10425 (K6972_10425) pgsA 2161116..2161655 (-) 540 WP_014638849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K6972_RS10430 (K6972_10430) rodZ 2161675..2162529 (-) 855 WP_015647575.1 cytoskeleton protein RodZ -
  K6972_RS10435 (K6972_10435) yfmH 2162611..2163894 (-) 1284 WP_222759531.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  K6972_RS10440 (K6972_10440) yfmF 2163891..2165144 (-) 1254 WP_222759533.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  K6972_RS10445 (K6972_10445) yaaA 2165218..2165601 (+) 384 WP_222759535.1 S4 domain-containing protein YaaA -
  K6972_RS10450 (K6972_10450) recF 2165604..2166698 (+) 1095 WP_105136699.1 DNA replication/repair protein RecF Machinery gene
  K6972_RS10455 (K6972_10455) guaB 2166770..2168251 (-) 1482 WP_044759067.1 IMP dehydrogenase -
  K6972_RS10460 (K6972_10460) trpS 2168483..2169508 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  K6972_RS10465 (K6972_10465) - 2169863..2170735 (+) 873 WP_222759537.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42190.36 Da        Isoelectric Point: 7.4360

>NTDB_id=527192 K6972_RS10450 WP_105136699.1 2165604..2166698(+) (recF) [Streptococcus suis strain NJ3]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKELSISGLLHRASGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQDISDKREELTIEYQSSIKFTTPVNLIDIFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=527192 K6972_RS10450 WP_105136699.1 2165604..2166698(+) (recF) [Streptococcus suis strain NJ3]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGTAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCGGGTTTACTCCATCGCGCAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGTTGATAAAAGGTGCGCCTGCTTTAAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGATATTTCAGATA
AGAGAGAGGAACTAACTATCGAATATCAATCCTCAATTAAGTTTACTACTCCTGTCAATTTAATTGACATATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGACAACACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATCG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAGCTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACCTCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATATTCCATATTGAGTCTGGTAAGGTTACTGAATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

42.973

100

0.437