Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K6976_RS10790 Genome accession   NZ_CP082202
Coordinates   2256275..2257369 (+) Length   364 a.a.
NCBI ID   WP_105136699.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251275..2262369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS10765 (K6976_10765) pgsA 2251787..2252326 (-) 540 WP_014638849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K6976_RS10770 (K6976_10770) rodZ 2252346..2253200 (-) 855 WP_015647575.1 cytoskeleton protein RodZ -
  K6976_RS10775 (K6976_10775) yfmH 2253282..2254565 (-) 1284 WP_222759531.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  K6976_RS10780 (K6976_10780) yfmF 2254562..2255815 (-) 1254 WP_222759533.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  K6976_RS10785 (K6976_10785) yaaA 2255889..2256272 (+) 384 WP_222759535.1 S4 domain-containing protein YaaA -
  K6976_RS10790 (K6976_10790) recF 2256275..2257369 (+) 1095 WP_105136699.1 DNA replication/repair protein RecF Machinery gene
  K6976_RS10795 (K6976_10795) guaB 2257441..2258922 (-) 1482 WP_044759067.1 IMP dehydrogenase -
  K6976_RS10800 (K6976_10800) trpS 2259154..2260179 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  K6976_RS10805 (K6976_10805) - 2260534..2261406 (+) 873 WP_222759537.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42190.36 Da        Isoelectric Point: 7.4360

>NTDB_id=527095 K6976_RS10790 WP_105136699.1 2256275..2257369(+) (recF) [Streptococcus suis strain SS389]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKELSISGLLHRASGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQDISDKREELTIEYQSSIKFTTPVNLIDIFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=527095 K6976_RS10790 WP_105136699.1 2256275..2257369(+) (recF) [Streptococcus suis strain SS389]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGTAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCGGGTTTACTCCATCGCGCAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGTTGATAAAAGGTGCGCCTGCTTTAAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGATATTTCAGATA
AGAGAGAGGAACTAACTATCGAATATCAATCCTCAATTAAGTTTACTACTCCTGTCAATTTAATTGACATATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGACAACACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATCG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAGCTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACCTCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATATTCCATATTGAGTCTGGTAAGGTTACTGAATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

42.973

100

0.437