Detailed information NTG0526903

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: K6971_RS10020
• Genome accession: NZ_CP082200
• Coordinates: 2049032..2050126 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain Transconjugant cDY107
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2044032..2055126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6971_RS09995 (K6971_09995)	pgsA	2044551..2045090 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
K6971_RS10000 (K6971_10000)	rodZ	2045100..2045957 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
K6971_RS10005 (K6971_10005)	yfmH	2046039..2047322 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
K6971_RS10010 (K6971_10010)	yfmF	2047319..2048572 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
K6971_RS10015 (K6971_10015)	yaaA	2048646..2049029 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
K6971_RS10020 (K6971_10020)	recF	2049032..2050126 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
K6971_RS10025 (K6971_10025)	guaB	2050398..2051879 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
K6971_RS10030 (K6971_10030)	trpS	2052111..2053136 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
K6971_RS10035 (K6971_10035)	-	2053491..2054363 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=526903 K6971_RS10020 WP_012028050.1 2049032..2050126(+) (recF) [Streptococcus suis strain Transconjugant cDY107]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=526903 K6971_RS10020 WP_012028050.1 2049032..2050126(+) (recF) [Streptococcus suis strain Transconjugant cDY107]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442