Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   I6J07_RS11485 Genome accession   NZ_CP068063
Coordinates   2291151..2292779 (-) Length   542 a.a.
NCBI ID   WP_103170150.1    Uniprot ID   -
Organism   Staphylococcus equorum strain FDAARGOS_1150     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2286151..2297779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J07_RS11450 (I6J07_11465) - 2287065..2288156 (+) 1092 WP_053464975.1 cysteine desulfurase family protein -
  I6J07_RS11455 (I6J07_11470) - 2288158..2288697 (+) 540 WP_053464974.1 transcription repressor NadR -
  I6J07_RS11460 (I6J07_11475) - 2288646..2289032 (-) 387 Protein_2217 type I restriction-modification system subunit M N-terminal domain-containing protein -
  I6J07_RS11465 (I6J07_11480) - 2289175..2289396 (-) 222 WP_103170153.1 hypothetical protein -
  I6J07_RS11470 (I6J07_11485) - 2289411..2289917 (-) 507 WP_031797623.1 DUF1643 domain-containing protein -
  I6J07_RS11475 (I6J07_11490) - 2289931..2290242 (-) 312 WP_103170152.1 DUF960 family protein -
  I6J07_RS11480 (I6J07_11495) - 2290338..2290676 (-) 339 WP_103170151.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J07_RS11485 (I6J07_11500) ccrB 2291151..2292779 (-) 1629 WP_103170150.1 cassette chromosome recombinase CcrB Machinery gene
  I6J07_RS11490 (I6J07_11505) ccrA 2292800..2294149 (-) 1350 WP_103170149.1 cassette chromosome recombinase CcrA Machinery gene
  I6J07_RS11495 (I6J07_11510) - 2294341..2294616 (-) 276 WP_103170148.1 hypothetical protein -
  I6J07_RS11500 (I6J07_11515) cch1 2294687..2296477 (-) 1791 WP_103170147.1 cassette chromosome replicative helicase -
  I6J07_RS11505 (I6J07_11520) ssb 2296477..2296770 (-) 294 WP_002511823.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62463.37 Da        Isoelectric Point: 9.5992

>NTDB_id=526891 I6J07_RS11485 WP_103170150.1 2291151..2292779(-) (ccrB) [Staphylococcus equorum strain FDAARGOS_1150]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDADKGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNTILENIYTGQHQRALEGYYQGN
IPLGYSNIPDNKKDLMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYVGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQTLWDKVQARKKQVSEKPQVHGKGTNLLTGLISCERCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVIKQVVERVNQEHQIDTSALNHDIAYKQQQYD
EVQIKLDNLIKTLEDNPDLTSVLKNTIHQYEKQLNDITTQINQLKQQQNAPKTIYDANEIATILRHIFKNIETMDKAQLK
ALYLTVIDHIDIRKDDHHKKQFYVTLKLNHEIIKQLFHNTPLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=526891 I6J07_RS11485 WP_103170150.1 2291151..2292779(-) (ccrB) [Staphylococcus equorum strain FDAARGOS_1150]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGCGTATCAACAGAAATGCAAAGTGCAGAGGGTTATAGTAT
CGACGGTCAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAGTCTATGAACCGCCCTGCACTTCAACGTATGTTACATGATGCGGATAAAGGTCATATTGATTGTGTTATG
GTGTATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAGCGTATGGAAGTCAACACTTCTTCTGGTAAACTCATGTTACAAATACTTGCAAGTTTTTCCG
AATTTGAAAGAAATACCATTTTAGAGAATATTTACACCGGACAACATCAAAGAGCCTTAGAAGGCTATTACCAAGGTAAT
ATTCCTTTAGGATATTCTAATATACCAGATAATAAAAAAGATTTGATGATTAATCAGCATGAAGCTAATATTGTGAAATA
TATTTTTGAATCTTACGCCAAAGGTCATGGTTATCGTAAAATTGCCAACGCACTCAATCATAAAGGTTATGTCACAAAGA
AAGGGAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCTAATCCCTTCTATGTCGGTAAAATACAATTCGCGAAA
TACAAAGATTGGAATGATAAACGACGTAAAGGGTTAAATGATAAACCCGTAATTGCCGAAGGCAAACACACCCCTATTAT
TAGCCAAACATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTACATGGTAAAGGAACCA
ACCTTTTGACTGGATTAATTTCGTGTGAAAGATGTGGAGCGGCATACGCAGCATCGAATACAACGAATACACTTAAAGAT
GGTACTAAAAAACGCATTCGCTACTATTCGTGTAGTAACTTTCGTAATAAAGGGTCAAAAGTATGTTCTGCGAATAGTGT
CAGAGCCGATGTAATTGAAAAATATGTTATGGATCAAATACTCGAAATTGTTAAAAGCGACAAGGTTATCAAGCAAGTCG
TTGAGCGTGTCAATCAAGAACATCAAATTGATACGTCTGCACTCAATCATGATATCGCATATAAGCAACAACAATATGAT
GAGGTCCAAATCAAATTAGATAACTTGATCAAAACACTTGAAGATAATCCAGACTTAACATCTGTGCTTAAGAATACGAT
TCATCAGTATGAAAAACAACTCAATGACATCACAACTCAAATCAATCAACTTAAGCAACAACAAAATGCCCCCAAAACAA
TATATGATGCTAATGAGATTGCGACTATATTACGTCATATATTCAAAAATATTGAAACCATGGATAAAGCACAACTCAAA
GCACTATACCTTACAGTCATAGACCACATTGATATTCGTAAAGACGACCATCATAAAAAGCAGTTCTATGTCACATTAAA
ACTCAATCATGAAATCATTAAACAACTCTTCCATAATACCCCTCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterProScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

82.841

100

0.828