Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   K6971_RS08520 Genome accession   NZ_CP082200
Coordinates   1719691..1720731 (-) Length   346 a.a.
NCBI ID   WP_012027749.1    Uniprot ID   -
Organism   Streptococcus suis strain Transconjugant cDY107     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714691..1725731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6971_RS08490 (K6971_08490) - 1715347..1715655 (-) 309 WP_012027746.1 YlxQ-related RNA-binding protein -
  K6971_RS08495 (K6971_08495) rnpM 1715642..1715938 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  K6971_RS08500 (K6971_08500) nusA 1715955..1717097 (-) 1143 WP_004194726.1 transcription termination factor NusA -
  K6971_RS08505 (K6971_08505) rimP 1717171..1717641 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  K6971_RS08510 (K6971_08510) trmB 1718212..1718850 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6971_RS08515 (K6971_08515) ccrZ 1718847..1719641 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  K6971_RS08520 (K6971_08520) pptB 1719691..1720731 (-) 1041 WP_012027749.1 ABC transporter permease Regulator
  K6971_RS08525 (K6971_08525) pptA 1720728..1721462 (-) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  K6971_RS08530 (K6971_08530) - 1721525..1721938 (+) 414 WP_012027752.1 HIT family protein -
  K6971_RS08535 (K6971_08535) - 1721940..1722242 (+) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  K6971_RS08540 (K6971_08540) - 1722351..1723544 (-) 1194 WP_012027754.1 LCP family protein -
  K6971_RS08545 (K6971_08545) - 1723541..1724068 (-) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  K6971_RS08550 (K6971_08550) tsaE 1724061..1724501 (-) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40147.52 Da        Isoelectric Point: 10.1278

>NTDB_id=526889 K6971_RS08520 WP_012027749.1 1719691..1720731(-) (pptB) [Streptococcus suis strain Transconjugant cDY107]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVSGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGIGTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLVVELGFALLFSKENA
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=526889 K6971_RS08520 WP_012027749.1 1719691..1720731(-) (pptB) [Streptococcus suis strain Transconjugant cDY107]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATATCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TATCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACAACGGT
TAAAGGAATCGGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTAGTAGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATGCG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468
  pptB Streptococcus thermophilus LMD-9

45.455

100

0.462