Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   I6J14_RS03445 Genome accession   NZ_CP068057
Coordinates   709190..710419 (-) Length   409 a.a.
NCBI ID   WP_115252819.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 704190..715419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS03425 (I6J14_03425) - 704345..705368 (+) 1024 Protein_676 IS30 family transposase -
  I6J14_RS03430 (I6J14_03430) - 705529..707637 (+) 2109 WP_003050352.1 ATP-dependent Clp protease ATP-binding subunit -
  I6J14_RS03435 (I6J14_03435) - 707694..708437 (-) 744 WP_003050349.1 hypothetical protein -
  I6J14_RS03440 (I6J14_03440) yihA 708581..709180 (-) 600 WP_115252820.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  I6J14_RS03445 (I6J14_03445) clpX 709190..710419 (-) 1230 WP_115252819.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I6J14_RS03450 (I6J14_03450) - 710535..710705 (-) 171 WP_003050338.1 hypothetical protein -
  I6J14_RS03455 (I6J14_03455) - 710725..711222 (-) 498 WP_115252818.1 dihydrofolate reductase -
  I6J14_RS03460 (I6J14_03460) - 711303..712142 (-) 840 WP_003050334.1 thymidylate synthase -
  I6J14_RS03465 (I6J14_03465) - 712357..713538 (+) 1182 WP_003050333.1 hydroxymethylglutaryl-CoA synthase -
  I6J14_RS03470 (I6J14_03470) - 713519..714796 (+) 1278 WP_115252817.1 hydroxymethylglutaryl-CoA reductase, degradative -
  I6J14_RS03475 (I6J14_03475) - 715155..715346 (-) 192 Protein_686 IS3 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45070.63 Da        Isoelectric Point: 4.6574

>NTDB_id=526713 I6J14_RS03445 WP_115252819.1 709190..710419(-) (clpX) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MAGNRTNDIKVYCSFCGKSQNEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQNR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVIKVRITKAAVEG
KSKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=526713 I6J14_RS03445 WP_115252819.1 709190..710419(-) (clpX) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGCAAGAGCCAAAACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TATTAGCTGATCTAACAGAAGTTCCAAAACCCAAAGAGCTCCTTGAGGTTTTAAACCAGTATGTTGTTGGCCAAAATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTATCATTCACGGAAAGTCGTGATGATGAAGATGT
GGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTGGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCCTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGCGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAGCAGGCCTTACTAAAAATTA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGACGGCATTGAAGATATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGACGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATACCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAGATT
TTGACAGAACCAAGAAATGCCCTAGTCAAGCAATATCAAGCTCTTCTTTCTTACGATGGCGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CAATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCATAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-388)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.753

100

0.888
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.603

98.044

0.575