Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6J16_RS11055 Genome accession   NZ_CP068055
Coordinates   2741594..2742526 (-) Length   310 a.a.
NCBI ID   WP_016475229.1    Uniprot ID   -
Organism   Sutterella wadsworthensis strain FDAARGOS_1159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2736594..2747526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J16_RS11030 (I6J16_11030) trmL 2736679..2737149 (-) 471 WP_005429350.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  I6J16_RS11035 (I6J16_11035) rpoH 2737223..2738023 (-) 801 WP_236578872.1 RNA polymerase sigma factor RpoH -
  I6J16_RS11040 (I6J16_11040) - 2738461..2739369 (-) 909 WP_005429352.1 ABC transporter permease -
  I6J16_RS11045 (I6J16_11045) - 2739366..2740061 (-) 696 WP_005429353.1 cell division ATP-binding protein FtsE -
  I6J16_RS11050 (I6J16_11050) - 2740074..2741543 (-) 1470 WP_016475230.1 Ppx/GppA phosphatase family protein -
  I6J16_RS11055 (I6J16_11055) pilA 2741594..2742526 (-) 933 WP_016475229.1 signal recognition particle-docking protein FtsY Machinery gene
  I6J16_RS11060 (I6J16_11060) rsmD 2742574..2743278 (+) 705 WP_236578873.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I6J16_RS11065 (I6J16_11065) coaD 2743356..2743847 (+) 492 WP_005429366.1 pantetheine-phosphate adenylyltransferase -
  I6J16_RS11070 (I6J16_11070) - 2743903..2746089 (-) 2187 WP_021995110.1 hypothetical protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 33053.82 Da        Isoelectric Point: 5.1145

>NTDB_id=526641 I6J16_RS11055 WP_016475229.1 2741594..2742526(-) (pilA) [Sutterella wadsworthensis strain FDAARGOS_1159]
MALGSSEGWFSRLKNGLSRTRVNIVGLFSGGVVDEDFLEELEFALISADVGVETTTHILERLRSDIKLQGLKTQEEVKLA
LRDELVTILKPAEGVLNVDQAKPCVIMMCGVNGAGKTTSIGKLAKRFADNGKSVLLAAGDTFRAAAREQLAVWGERNRVE
VIAQTGGDPAAVVFDAVNAGRARSMDVVIADTAGRLPTQTNLMEELSRIRRAQEKALEGAPHEVILVVDGTNGQNALAQV
AAFDTYAHLTGLIVTKLDGTAKGGVLAAITAARGERRLPIYYIGVGEKLEDLQPFSAEEFANALVGLDAK

Nucleotide


Download         Length: 933 bp        

>NTDB_id=526641 I6J16_RS11055 WP_016475229.1 2741594..2742526(-) (pilA) [Sutterella wadsworthensis strain FDAARGOS_1159]
ATGGCTTTGGGTTCTTCTGAGGGTTGGTTTTCCCGTTTGAAAAATGGGCTTTCACGCACCCGCGTCAATATCGTCGGACT
TTTTTCAGGCGGCGTCGTTGACGAGGATTTTCTCGAGGAGCTGGAGTTTGCGCTGATCTCCGCTGATGTCGGCGTAGAGA
CAACAACGCATATCTTAGAGCGCCTTCGCAGCGATATTAAGCTCCAAGGATTGAAGACTCAGGAAGAGGTGAAACTCGCG
CTGCGTGATGAGCTGGTCACCATTCTCAAACCTGCTGAAGGCGTACTCAACGTTGATCAAGCAAAGCCTTGCGTCATCAT
GATGTGCGGTGTGAACGGTGCTGGTAAAACGACTAGTATCGGTAAACTTGCCAAACGTTTCGCCGACAACGGCAAGAGCG
TCCTTTTAGCCGCCGGTGATACTTTCCGTGCTGCCGCACGGGAGCAGCTCGCCGTCTGGGGTGAACGCAACCGCGTCGAA
GTTATTGCACAGACTGGAGGTGATCCGGCAGCGGTGGTTTTTGATGCCGTCAATGCCGGCCGGGCCCGCAGCATGGATGT
GGTTATCGCCGATACAGCGGGACGACTTCCTACGCAGACCAATCTGATGGAAGAACTCTCGCGCATCCGCCGCGCTCAAG
AAAAAGCGCTCGAAGGTGCGCCGCATGAGGTGATTCTCGTGGTAGACGGTACAAACGGCCAAAATGCATTGGCGCAGGTG
GCCGCGTTCGACACTTACGCTCACCTTACCGGTCTGATCGTTACCAAATTGGATGGCACGGCCAAAGGCGGCGTTCTTGC
AGCCATTACAGCTGCCCGAGGAGAGCGGAGACTGCCCATTTACTATATCGGCGTAGGCGAAAAACTCGAAGACCTGCAGC
CTTTCAGTGCTGAAGAATTTGCCAATGCGCTGGTTGGTCTGGACGCAAAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(26-85)

SRP54-type protein, GTPase domain (SRP54)

(104-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.106

97.742

0.548