Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6J18_RS20945 Genome accession   NZ_CP068053
Coordinates   4164469..4166178 (+) Length   569 a.a.
NCBI ID   WP_201647701.1    Uniprot ID   A0A974NLN4
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4159469..4171178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS20920 (I6J18_20920) xseB 4159714..4159947 (+) 234 WP_040373426.1 exodeoxyribonuclease VII small subunit -
  I6J18_RS20925 (I6J18_20925) - 4159947..4160840 (+) 894 WP_040373419.1 polyprenyl synthetase family protein -
  I6J18_RS20930 (I6J18_20930) dxs 4161110..4163002 (+) 1893 WP_040373418.1 1-deoxy-D-xylulose-5-phosphate synthase -
  I6J18_RS20935 (I6J18_20935) - 4163007..4163846 (+) 840 WP_201647700.1 TlyA family RNA methyltransferase -
  I6J18_RS20940 (I6J18_20940) ahrC 4163996..4164445 (+) 450 WP_040375068.1 transcriptional regulator AhrC/ArgR -
  I6J18_RS20945 (I6J18_20945) recN 4164469..4166178 (+) 1710 WP_201647701.1 DNA repair protein RecN Machinery gene
  I6J18_RS20950 (I6J18_20950) spoIVB 4166344..4167642 (+) 1299 WP_040375067.1 SpoIVB peptidase -
  I6J18_RS20955 (I6J18_20955) spo0A 4167951..4168739 (+) 789 WP_040375066.1 sporulation transcription factor Spo0A -
  I6J18_RS20960 (I6J18_20960) - 4168980..4170557 (+) 1578 WP_201647702.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64161.05 Da        Isoelectric Point: 4.9062

>NTDB_id=526586 I6J18_RS20945 WP_201647701.1 4164469..4166178(+) (recN) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MLTELSIRNFAIIDALSISLEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFIRHGESKAEIEGLFIIDEEKHPVYEK
MQEIGIDITDGMVVLRRDIALSGKSACRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDDRLHLPLLDQFGGEKIVQAL
SEYQRLYKDYDYAVKQLKKLSQNEQQMVHRLDLIQFQHDEIESAELVLGEDDSLTEEKKKINNFERLHESLQTGYQSLTG
EQRGLDWLSLAMNNLEEAAALDESTKGISESISNSYFIIEDAVSLIRDQLDSLEYDPERLDLIESRLNEINQLKRKYGKT
IEEIVEYGSMIEEEIETLQNRETHIVKLEAQIKSIRADLLVEAKNLSELRQTYAKQLTNHIQKELQELYMEKTIFEAHFH
KTAFTFTDADEVGKNGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQA
IAEKIHQVASGSQVLCISHLPQVAAMADIHLFIAKNIKDGRTNTSVKSLNEEDKIKEIGRMISGVEITDLTKEHARELIL
QADQKKYVK

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=526586 I6J18_RS20945 WP_201647701.1 4164469..4166178(+) (recN) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
TTGTTAACAGAATTATCAATTCGCAATTTCGCAATCATTGATGCACTTTCAATTTCTTTAGAAAAAGGATTAACGGTCTT
AACTGGGGAAACGGGTGCTGGAAAATCAATAATTATTGACGCGATTCACCTATTGGTTGGAGGACGTGGATCGGCAGAGT
TCATCAGACACGGAGAATCAAAGGCTGAAATTGAAGGTTTATTTATTATTGACGAAGAAAAACACCCAGTGTATGAAAAA
ATGCAGGAGATAGGCATTGATATAACGGATGGGATGGTTGTTTTACGCCGAGATATTGCTTTGAGTGGAAAGAGCGCTTG
TCGGGTGAATGGAAAGCTTGTGACGATTGCCATACTTAGGGAAATCGGCCGAACGCTTATTGATATTCATGGCCAGCATG
AACATCAGGAGCTGATGGATGATCGACTTCATTTGCCGCTTCTGGATCAATTTGGCGGAGAGAAAATAGTGCAAGCGCTA
TCCGAATATCAACGATTGTACAAGGACTATGATTATGCAGTTAAGCAATTAAAGAAATTGAGTCAAAATGAACAGCAAAT
GGTTCATCGACTCGATTTGATTCAGTTTCAGCATGATGAAATCGAAAGTGCTGAACTGGTGCTGGGCGAAGATGACAGCT
TGACTGAAGAGAAAAAGAAAATTAATAACTTTGAACGTCTTCATGAGTCCTTGCAAACAGGGTATCAGTCTTTGACTGGG
GAGCAGCGTGGATTAGATTGGCTGTCTTTGGCGATGAATAACCTTGAAGAAGCAGCTGCGCTTGATGAATCTACAAAAGG
GATTTCTGAATCCATTTCGAACAGCTACTTTATTATTGAAGACGCCGTCTCATTAATTCGTGATCAATTGGATTCCCTCG
AATATGATCCAGAGCGGCTCGATTTAATTGAAAGCCGTTTAAATGAAATTAATCAGCTCAAACGTAAATATGGGAAAACC
ATTGAAGAAATTGTTGAGTATGGTTCGATGATTGAAGAGGAAATTGAAACCTTGCAAAACCGTGAAACACATATCGTTAA
GCTGGAAGCTCAAATCAAATCCATACGAGCCGATTTACTTGTTGAAGCGAAGAATTTATCTGAGCTTCGGCAAACATATG
CTAAACAGCTTACTAATCATATCCAGAAGGAGTTACAAGAGCTGTACATGGAAAAAACGATATTCGAAGCACATTTCCAT
AAAACAGCGTTTACCTTTACGGACGCAGACGAAGTGGGGAAAAACGGTCTCGACAGTATGGAGTTTTATATATCAACGAA
CCCCGGGGAACCGTTAAAACCACTATCAAAAATTGCTTCTGGCGGTGAATTATCGCGGATCATGCTTGCCCTGAAAAGCA
TTTTCTCCAAACATCAAGGAATTACTTCAATTATTTTTGATGAAGTCGATACAGGTGTCAGCGGAAGAGTCGCCCAAGCC
ATTGCAGAAAAAATTCATCAAGTTGCTTCAGGCTCACAAGTGTTATGTATTTCCCACTTGCCTCAGGTTGCGGCAATGGC
AGATATTCACCTGTTTATTGCTAAGAATATCAAAGACGGCCGGACGAATACATCTGTGAAGTCATTAAATGAAGAGGATA
AAATTAAAGAAATCGGCCGCATGATTTCAGGGGTCGAAATTACTGACTTAACGAAGGAACATGCTCGGGAATTAATCCTT
CAGGCAGATCAAAAAAAGTATGTTAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.15

100

0.617