Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6J18_RS20685 Genome accession   NZ_CP068053
Coordinates   4115439..4116512 (+) Length   357 a.a.
NCBI ID   WP_040374239.1    Uniprot ID   -
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4110439..4121512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS20655 (I6J18_20655) - 4111303..4111476 (-) 174 WP_040374245.1 DUF2759 domain-containing protein -
  I6J18_RS20660 (I6J18_20660) - 4111850..4112476 (+) 627 WP_040374244.1 MBL fold metallo-hydrolase -
  I6J18_RS20665 (I6J18_20665) - 4112505..4113593 (+) 1089 WP_040374243.1 class I SAM-dependent methyltransferase -
  I6J18_RS20670 (I6J18_20670) - 4113706..4113948 (-) 243 WP_040374242.1 DUF2626 domain-containing protein -
  I6J18_RS20675 (I6J18_20675) - 4114038..4114730 (-) 693 WP_040374241.1 metalloregulator ArsR/SmtB family transcription factor -
  I6J18_RS20680 (I6J18_20680) - 4114932..4115324 (+) 393 WP_040374240.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  I6J18_RS20685 (I6J18_20685) comGA 4115439..4116512 (+) 1074 WP_040374239.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J18_RS20690 (I6J18_20690) comGB 4116499..4117530 (+) 1032 WP_040374238.1 competence type IV pilus assembly protein ComGB -
  I6J18_RS20695 (I6J18_20695) comGC 4117561..4117713 (+) 153 Protein_3983 competence type IV pilus major pilin ComGC -
  I6J18_RS20700 (I6J18_20700) - 4117945..4119642 (+) 1698 WP_201647689.1 toll/interleukin-1 receptor domain-containing protein -
  I6J18_RS20705 (I6J18_20705) - 4119896..4120477 (+) 582 WP_040373655.1 recombinase family protein -
  I6J18_RS20710 (I6J18_20710) - 4120973..4121245 (-) 273 WP_040373654.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39720.87 Da        Isoelectric Point: 7.1350

>NTDB_id=526585 I6J18_RS20685 WP_040374239.1 4115439..4116512(+) (comGA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MESIEKTADSILSRAVRLSASDIHILPRKEGPLVQFRIDNKLVPQEVLTQDESDRLISHLKFLASMDIGEKRRPQSGALT
MNLESRMVGLRLSTLPGTYSESLVIRLIPQQSILPLEQLSLFSTTANKLIALLKHSHGMIIFTGPTGSGKTTTLYSLLHH
ARDMINRNVITLEDPIENESENVLQVQINEKAGITYSVGLKAALRHDPDIIMVGEIRDAETAKIAVRAAMTGHLILTTMH
TRDAKGAIYRLLEFGVSSIEVEQTLIAITAQRLVELHCPSCGSSGCTPECMLQKRAKRASVYELLYGKELIEALKAAKGE
THQAGYRQLKHEISKAIAFGYIEAEEYERLVYEHETK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=526585 I6J18_RS20685 WP_040374239.1 4115439..4116512(+) (comGA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
TTGGAATCGATTGAAAAAACTGCAGACAGTATTTTATCTCGTGCCGTCCGTTTATCTGCTTCGGACATCCACATTCTACC
CCGCAAAGAAGGACCACTTGTACAATTTCGCATCGATAACAAGCTCGTTCCACAAGAAGTACTGACTCAAGATGAGTCAG
ATCGGTTAATCTCACATCTGAAATTTTTAGCATCTATGGATATCGGAGAAAAGAGGCGCCCTCAAAGCGGTGCATTAACA
ATGAATCTTGAAAGCCGGATGGTAGGTCTTCGATTGTCGACCTTGCCAGGCACCTACTCAGAAAGCCTCGTTATTCGTTT
AATCCCTCAGCAAAGTATCTTACCTCTCGAACAGCTGTCCCTTTTCTCTACTACCGCCAATAAACTAATTGCCCTCCTGA
AGCATTCCCACGGAATGATAATATTCACTGGACCTACAGGCAGCGGCAAGACCACGACCCTCTATTCGTTACTTCATCAT
GCTAGAGACATGATTAACAGAAATGTCATCACACTCGAAGACCCCATTGAAAACGAATCAGAAAATGTTCTCCAAGTACA
AATTAATGAAAAAGCAGGAATTACTTATTCTGTCGGACTAAAAGCCGCTTTAAGACATGATCCTGATATTATCATGGTTG
GTGAAATCCGCGATGCGGAAACGGCCAAGATTGCCGTCCGGGCAGCCATGACGGGTCATTTAATTCTTACAACCATGCAT
ACTAGAGATGCAAAGGGTGCGATTTATCGATTGCTTGAATTCGGTGTCAGCTCGATTGAAGTTGAACAGACCCTGATTGC
CATCACTGCACAAAGACTGGTTGAATTACACTGTCCTAGCTGCGGAAGCAGTGGATGTACCCCAGAATGCATGCTTCAAA
AACGCGCTAAACGGGCAAGTGTCTATGAATTGCTATATGGAAAAGAGCTGATTGAAGCCTTAAAGGCAGCCAAGGGTGAG
ACGCATCAGGCAGGCTATAGGCAGCTAAAACATGAAATCAGTAAGGCCATCGCTTTTGGATACATTGAAGCGGAAGAATA
TGAACGACTGGTGTATGAACATGAAACGAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.465

99.44

0.571
  pilB Haemophilus influenzae 86-028NP

36.648

98.599

0.361