Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J18_RS14555 Genome accession   NZ_CP068053
Coordinates   2843836..2844378 (+) Length   180 a.a.
NCBI ID   WP_040374707.1    Uniprot ID   A0A974NJS7
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2838836..2849378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS14525 (I6J18_14525) - 2839345..2840055 (+) 711 WP_040374742.1 DUF554 domain-containing protein -
  I6J18_RS14530 (I6J18_14530) yyaC 2840096..2840719 (-) 624 WP_040374711.1 spore protease YyaC -
  I6J18_RS14535 (I6J18_14535) - 2840980..2841801 (+) 822 WP_051387463.1 mechanosensitive ion channel family protein -
  I6J18_RS14540 (I6J18_14540) - 2841829..2842026 (+) 198 WP_040374710.1 DUF951 domain-containing protein -
  I6J18_RS14545 (I6J18_14545) ychF 2842195..2843295 (+) 1101 WP_040374709.1 redox-regulated ATPase YchF -
  I6J18_RS14550 (I6J18_14550) rpsF 2843495..2843782 (+) 288 WP_040374708.1 30S ribosomal protein S6 -
  I6J18_RS14555 (I6J18_14555) ssbA 2843836..2844378 (+) 543 WP_040374707.1 single-stranded DNA-binding protein Machinery gene
  I6J18_RS14560 (I6J18_14560) rpsR 2844424..2844663 (+) 240 WP_040374706.1 30S ribosomal protein S18 -
  I6J18_RS14565 (I6J18_14565) - 2844959..2845900 (+) 942 WP_040374705.1 YybS family protein -
  I6J18_RS14570 (I6J18_14570) - 2845939..2847906 (+) 1968 WP_201647550.1 DHH family phosphoesterase -
  I6J18_RS14575 (I6J18_14575) rplI 2847906..2848355 (+) 450 WP_040374704.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19909.64 Da        Isoelectric Point: 4.9994

>NTDB_id=526562 I6J18_RS14555 WP_040374707.1 2843836..2844378(+) (ssbA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRTYTNQQGEREADFINCVIWRKPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGKRVYITEVQAESVQFLEPKGSTGGNRTESSSYGNQKSNNSGGNSSSYDNPFGQGQGQNTNQNQRSNNNYTRVD
DDPFANDGKTIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=526562 I6J18_RS14555 WP_040374707.1 2843836..2844378(+) (ssbA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
ATGATGAATCGCGTAGTTTTAGTAGGTCGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTACCTGTGGC
AACCTTCACTTTGGCGGTTAATCGTACTTATACGAACCAGCAGGGTGAACGCGAAGCAGATTTCATCAATTGTGTAATTT
GGCGTAAACCGGCAGAAAACGTCGCTAATTTCCTTAAAAAAGGAAGCTTAGCTGGTGTAGACGGCCGTATCCAAACACGT
AATTTTGAAGGTCAAGATGGTAAACGGGTGTATATTACTGAAGTACAAGCTGAAAGTGTTCAATTCTTAGAGCCAAAGGG
TAGTACCGGAGGCAATAGGACGGAAAGTAGTTCTTATGGTAATCAAAAGAGCAATAACAGCGGCGGCAACAGCAGCAGCT
ATGATAATCCATTTGGACAAGGCCAAGGTCAAAATACTAACCAGAATCAACGCAGCAATAACAACTACACTCGTGTAGAT
GACGATCCATTTGCGAATGATGGCAAAACGATTGATATTTCTGATGATGATCTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.333

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

52.778

100

0.528