Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JKA77_RS16260 Genome accession   NZ_CP068033
Coordinates   3297483..3298079 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain LYS105A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3292483..3303079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKA77_RS16245 (JKA77_16245) helD 3292691..3294745 (-) 2055 WP_004179218.1 DNA helicase IV -
  JKA77_RS16250 (JKA77_16250) - 3294870..3295316 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JKA77_RS16255 (JKA77_16255) yccS 3295334..3297469 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JKA77_RS16260 (JKA77_16260) sxy/tfoX 3297483..3298079 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JKA77_RS16270 (JKA77_16270) sulA 3298428..3298937 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JKA77_RS16275 (JKA77_16275) ompA 3299290..3300360 (+) 1071 WP_002898408.1 porin OmpA -
  JKA77_RS16280 (JKA77_16280) matP 3300492..3300944 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JKA77_RS16285 (JKA77_16285) - 3301130..3302887 (+) 1758 WP_087834170.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=526428 JKA77_RS16260 WP_004179217.1 3297483..3298079(-) (sxy/tfoX) [Klebsiella pneumoniae strain LYS105A]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=526428 JKA77_RS16260 WP_004179217.1 3297483..3298079(-) (sxy/tfoX) [Klebsiella pneumoniae strain LYS105A]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51