Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DMB75_RS03775 Genome accession   NZ_CP068031
Coordinates   805094..805444 (+) Length   116 a.a.
NCBI ID   WP_238994715.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain DVP5-16-4677     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 800094..810444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB75_RS03745 (DMB75_003740) atpD 800181..801593 (+) 1413 WP_130548344.1 F0F1 ATP synthase subunit beta -
  DMB75_RS03750 (DMB75_003745) - 801613..802017 (+) 405 WP_130548343.1 F0F1 ATP synthase subunit epsilon -
  DMB75_RS03755 (DMB75_003750) - 802165..802398 (+) 234 WP_130548342.1 DUF1146 family protein -
  DMB75_RS03760 (DMB75_003755) murA 802508..803773 (+) 1266 WP_130548341.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DMB75_RS03765 (DMB75_003760) fabZ 803817..804254 (+) 438 WP_130548340.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DMB75_RS03770 (DMB75_003765) - 804489..804929 (-) 441 WP_130548339.1 YwpF-like family protein -
  DMB75_RS03775 (DMB75_003770) ssb 805094..805444 (+) 351 WP_238994715.1 single-stranded DNA-binding protein Machinery gene
  DMB75_RS03780 (DMB75_003775) - 805832..806515 (+) 684 WP_130548337.1 transglycosylase family protein -
  DMB75_RS03785 (DMB75_003780) tenA 806822..807511 (+) 690 WP_130548336.1 thiaminase II -
  DMB75_RS03790 (DMB75_003785) thiD 807504..808325 (+) 822 WP_130548335.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DMB75_RS03795 (DMB75_003790) thiM 808318..809106 (+) 789 WP_130548334.1 hydroxyethylthiazole kinase -
  DMB75_RS03800 (DMB75_003795) thiE 809110..809751 (+) 642 WP_130548333.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13706.39 Da        Isoelectric Point: 4.9571

>NTDB_id=526394 DMB75_RS03775 WP_238994715.1 805094..805444(+) (ssb) [Staphylococcus saccharolyticus strain DVP5-16-4677]
MYYKKEENKVATFCVATERNYKDENNEISSDYLLYKAFGKIATNIEKYTSQGTFVGITGQMRFRKYEKEGQTHFVTELYV
ETIKFMSPKMKNNDSLLDNQFNENAYQSDELEIMNI

Nucleotide


Download         Length: 351 bp        

>NTDB_id=526394 DMB75_RS03775 WP_238994715.1 805094..805444(+) (ssb) [Staphylococcus saccharolyticus strain DVP5-16-4677]
ATGTACTACAAGAAGGAGGAAAATAAAGTAGCGACATTTTGCGTCGCCACTGAAAGAAATTACAAAGATGAAAATAATGA
AATATCAAGTGATTATTTACTATATAAAGCTTTTGGTAAAATTGCCACTAACATTGAAAAGTACACATCTCAAGGCACAT
TCGTAGGTATAACTGGTCAAATGCGTTTTAGAAAATATGAAAAAGAAGGACAGACGCATTTTGTAACTGAATTATACGTG
GAAACTATAAAATTTATGTCCCCTAAAATGAAAAACAACGACAGCCTCCTTGATAATCAATTTAACGAAAACGCTTATCA
GTCAGACGAATTAGAAATTATGAATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus MW2

65.789

98.276

0.647
  ssb Staphylococcus aureus N315

65.789

98.276

0.647