Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DMB76_RS04435 Genome accession   NZ_CP068029
Coordinates   930812..931846 (+) Length   344 a.a.
NCBI ID   WP_115313031.1    Uniprot ID   A0A380H3R0
Organism   Staphylococcus saccharolyticus strain 13T0028     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 925812..936846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB76_RS04405 (DMB76_004405) - 926088..926813 (+) 726 WP_115313025.1 type 1 glutamine amidotransferase -
  DMB76_RS04410 (DMB76_004410) isaB 927039..927590 (+) 552 WP_115313026.1 immunodominant staphylococcal antigen IsaB family protein -
  DMB76_RS04415 (DMB76_004415) - 927667..928656 (-) 990 WP_115313027.1 FUSC family protein -
  DMB76_RS04420 (DMB76_004420) map 928833..929588 (+) 756 WP_115313028.1 type I methionyl aminopeptidase -
  DMB76_RS04425 (DMB76_004425) - 929719..930099 (+) 381 WP_115313029.1 hypothetical protein -
  DMB76_RS04430 (DMB76_004430) liaF 930114..930815 (+) 702 WP_115313030.1 cell wall-active antibiotics response protein LiaF -
  DMB76_RS04435 (DMB76_004435) vraS 930812..931846 (+) 1035 WP_115313031.1 sensor histidine kinase Regulator
  DMB76_RS04440 (DMB76_004440) vraR 931848..932477 (+) 630 WP_115313032.1 two-component system response regulator VraR Regulator
  DMB76_RS04445 (DMB76_004445) - 932535..933791 (-) 1257 WP_115313033.1 YihY/virulence factor BrkB family protein -
  DMB76_RS04450 (DMB76_004450) - 934148..934432 (-) 285 WP_115313034.1 YtxH domain-containing protein -
  DMB76_RS04455 (DMB76_004455) - 934439..934903 (-) 465 WP_115313035.1 low molecular weight protein-tyrosine-phosphatase -
  DMB76_RS04460 (DMB76_004460) - 935044..935250 (+) 207 WP_115313036.1 DUF1128 domain-containing protein -
  DMB76_RS04465 (DMB76_004465) - 935262..936503 (+) 1242 WP_115313037.1 aminopeptidase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39791.31 Da        Isoelectric Point: 6.5082

>NTDB_id=526369 DMB76_RS04435 WP_115313031.1 930812..931846(+) (vraS) [Staphylococcus saccharolyticus strain 13T0028]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGTVLAYKINQQNTWIKS
QIERSIEGETVGINNQNLELYSETLEIYHTLVPLNQELHRLRMKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFEVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKEEYLLLRIQDNGKGFNVHEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=526369 DMB76_RS04435 WP_115313031.1 930812..931846(+) (vraS) [Staphylococcus saccharolyticus strain 13T0028]
ATGAATCACTATCTAAGAGCTATTGGTTCTATGCTTATACTTGTTTATAGTATGCTCACTGCTTTTTTATTTATTGATAA
GGTTTTTGTTAATATTATCTATTTTCAAGGTATGTTTTATACTCAAATCTTTGGAATTCCTGTATTTTTATTTTTAAATA
TATTAATTATTTTACTATGTATTATAGTTGGAACAGTATTAGCGTATAAAATTAATCAACAAAATACGTGGATAAAATCC
CAAATTGAAAGGTCTATTGAGGGAGAGACTGTAGGTATTAATAATCAAAATTTAGAGTTATATAGTGAAACTTTAGAGAT
TTACCATACTTTAGTACCATTAAATCAAGAGTTACATCGTCTTAGAATGAAAACGCAAAATCTGACAAATGAAAATTATA
ATATTAATGATGTGAAAGTGAAAAAAATAATAGAAGATGAACGTCAACGTCTGGCGAGAGAATTGCATGACTCAGTGAGT
CAGCAATTATTCGCTGCAAGCATGATGTTATCTGCTATTAAAGAATCAAAGTTAGAACCTCCACTGGATCAACAAATTCC
TGTTCTAGAAAAAATGGTTCAAGATTCACAACTTGAGATGAGAGCGTTGCTTTTACATTTAAGACCAATTGGTTTAAAGG
ATAAGTCATTAGGTGAAGGTATTAAAGATTTAGTGATTGATCTTCAAAAGAAAGTTCCTATGAAAGTAGTACATGAAATC
CAAGATTTTGAGGTGCCTAAAGGCATTGAGGACCATTTATTTAGAATTACACAAGAAGCCATTTCTAATACATTGAGACA
TTCAAATGGCACGAAGGTGACTGTTGAATTATTTAATAAAGAAGAGTATTTATTGTTAAGAATACAAGATAATGGCAAAG
GCTTTAATGTACATGAAAAGTTTGAACAAAGTTATGGTTTAAAAAACATGAGAGAACGTGCTTTAGAAATCGGTGCAACG
TTTCATATCGTATCTTTGCCTGATTCCGGTACGCGAATAGAAGTGAAAGCACCATTGAATAAGGAGGAAGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380H3R0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

92.711

99.709

0.924