Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DMB76_RS03825 Genome accession   NZ_CP068029
Coordinates   813621..814016 (+) Length   131 a.a.
NCBI ID   WP_130549610.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain 13T0028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 808621..819016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB76_RS03795 (DMB76_003795) atpD 808668..810080 (+) 1413 WP_115312935.1 F0F1 ATP synthase subunit beta -
  DMB76_RS03800 (DMB76_003800) - 810100..810504 (+) 405 WP_115312936.1 F0F1 ATP synthase subunit epsilon -
  DMB76_RS03805 (DMB76_003805) - 810652..810885 (+) 234 WP_115312937.1 DUF1146 family protein -
  DMB76_RS03810 (DMB76_003810) murA 810995..812260 (+) 1266 WP_115312938.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DMB76_RS03815 (DMB76_003815) fabZ 812303..812740 (+) 438 WP_115312939.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DMB76_RS03820 (DMB76_003820) - 812991..813431 (-) 441 WP_115312940.1 YwpF-like family protein -
  DMB76_RS03825 (DMB76_003825) ssb 813621..814016 (+) 396 WP_130549610.1 single-stranded DNA-binding protein Machinery gene
  DMB76_RS03830 (DMB76_003830) - 814401..815084 (+) 684 WP_115312942.1 transglycosylase family protein -
  DMB76_RS03835 (DMB76_003835) tenA 815392..816081 (+) 690 WP_115312943.1 thiaminase II -
  DMB76_RS03840 (DMB76_003840) thiD 816074..816895 (+) 822 WP_115312944.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DMB76_RS03845 (DMB76_003845) thiM 816888..817676 (+) 789 WP_115314118.1 hydroxyethylthiazole kinase -
  DMB76_RS03850 (DMB76_003850) thiE 817680..818321 (+) 642 WP_115312945.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15083.03 Da        Isoelectric Point: 5.2896

>NTDB_id=526367 DMB76_RS03825 WP_130549610.1 813621..814016(+) (ssb) [Staphylococcus saccharolyticus strain 13T0028]
MLNKIVIVGRLTKDAQIYEKEESKVATFCVATERNYKDENNEISSDYSICKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKMKNNDNPLDNQFNENAYQSVELEIMNI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=526367 DMB76_RS03825 WP_130549610.1 813621..814016(+) (ssb) [Staphylococcus saccharolyticus strain 13T0028]
ATGCTAAATAAAATCGTAATAGTTGGTAGACTAACTAAAGATGCACAAATTTATGAGAAGGAGGAAAGTAAAGTAGCGAC
ATTTTGCGTCGCCACTGAAAGAAATTATAAAGATGAAAATAATGAAATATCAAGTGATTATTCAATATGTAAAGCTTTTG
GTAAAACTGCCACTAACATTGAAAAGTACACATCTCAAGGCACACTCGTAGGTATAACTGGTCAAATGCGTTCTAGAAAA
TATGAAAAAGAAGGACAGACGCATTTTGTAACTGAATTATACGTGGAAACTATAAAATTTATGTCCCCTAAAATGAAAAA
CAACGACAACCCCCTTGATAATCAATTTAACGAAAACGCTTATCAGTCAGTCGAATTAGAAATTATGAATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

83.486

83.206

0.695
  ssb Staphylococcus aureus MW2

82.569

83.206

0.687