Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   JKJ11_RS14790 Genome accession   NZ_CP068024
Coordinates   3168160..3168780 (+) Length   206 a.a.
NCBI ID   WP_252038391.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163160..3173780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS14770 (JKJ11_14760) - 3163413..3164333 (-) 921 WP_038223002.1 ABC transporter ATP-binding protein -
  JKJ11_RS14775 (JKJ11_14765) - 3164499..3166145 (-) 1647 WP_006074439.1 SulP family inorganic anion transporter -
  JKJ11_RS14780 (JKJ11_14770) can 3166378..3167037 (+) 660 WP_006074438.1 carbonate dehydratase -
  JKJ11_RS14785 (JKJ11_14775) hpt 3167102..3167632 (-) 531 WP_006074437.1 hypoxanthine phosphoribosyltransferase -
  JKJ11_RS14790 (JKJ11_14780) opaR 3168160..3168780 (+) 621 WP_252038391.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  JKJ11_RS14795 (JKJ11_14785) lpdA 3168881..3170308 (-) 1428 WP_006074435.1 dihydrolipoyl dehydrogenase -
  JKJ11_RS14800 (JKJ11_14790) aceF 3170582..3172489 (-) 1908 WP_252038392.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23666.92 Da        Isoelectric Point: 5.3141

>NTDB_id=526340 JKJ11_RS14790 WP_252038391.1 3168160..3168780(+) (opaR) [Vibrio sp. SCSIO 43133]
MDSIVKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVCQYSNFLS
NTIDLDVDIKENLTNILDGVVDMVIEDCHWNKVWFEWSTSTRDEVWPLFVSSNKTSQALIENMFIKAIERGEVCSQHNTK
HLTSLFHGICYSLFVEANRSSDGESIKSLTDCYMDMVCIYEKDNRH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=526340 JKJ11_RS14790 WP_252038391.1 3168160..3168780(+) (opaR) [Vibrio sp. SCSIO 43133]
ATGGACTCAATAGTAAAAAGACCTAGAACTCGCTTATCTCCACAAAAGCGCAAGTTACAGCTTATGGAGATTGCACTAGA
AGTATTCGCGAAACGCGGCATTGGTCGTGGAGGTCACGCGGATATCGCAGAAATTGCACAAGTTTCAGTAGCAACGGTAT
TCAACTACTTCCCAACACGAGAAGACTTGGTTGATGAAGTACTTAACCACGTCGTCTGTCAGTATTCCAACTTCTTATCA
AATACCATTGACCTTGATGTCGACATCAAAGAAAACCTAACCAACATTCTTGATGGTGTGGTGGATATGGTGATCGAAGA
CTGTCACTGGAATAAGGTATGGTTTGAATGGAGTACATCTACGCGTGATGAGGTTTGGCCATTGTTTGTTTCATCGAACA
AAACTAGCCAAGCACTGATTGAGAACATGTTCATTAAAGCCATTGAACGTGGTGAAGTCTGCTCTCAACACAACACTAAG
CATCTTACTAGCCTATTCCACGGTATTTGCTATTCACTGTTTGTTGAAGCTAATCGCAGTAGTGATGGTGAATCAATTAA
GTCGTTGACCGACTGCTATATGGATATGGTTTGCATCTACGAGAAAGATAACCGCCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

73.039

99.029

0.723
  hapR Vibrio cholerae C6706

70.352

96.602

0.68
  hapR Vibrio cholerae strain A1552

70.352

96.602

0.68