Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   JKJ11_RS11690 Genome accession   NZ_CP068024
Coordinates   2486931..2488328 (-) Length   465 a.a.
NCBI ID   WP_062462808.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2481931..2493328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS11655 (JKJ11_11645) moaE 2482597..2483055 (-) 459 WP_252038227.1 molybdopterin synthase catalytic subunit MoaE -
  JKJ11_RS11660 (JKJ11_11650) moaD 2483057..2483302 (-) 246 WP_006072952.1 molybdopterin synthase sulfur carrier subunit -
  JKJ11_RS11665 (JKJ11_11655) moaC 2483299..2483778 (-) 480 WP_006072951.1 cyclic pyranopterin monophosphate synthase MoaC -
  JKJ11_RS11670 (JKJ11_11660) moaB 2483795..2484307 (-) 513 WP_006072950.1 molybdenum cofactor biosynthesis protein B -
  JKJ11_RS11675 (JKJ11_11665) moaA 2484352..2485341 (-) 990 WP_031494455.1 GTP 3',8-cyclase MoaA -
  JKJ11_RS11680 (JKJ11_11670) - 2485639..2486523 (+) 885 WP_006072948.1 YvcK family protein -
  JKJ11_RS11685 (JKJ11_11675) luxU 2486587..2486934 (-) 348 WP_006072947.1 quorum-sensing phosphorelay protein LuxU -
  JKJ11_RS11690 (JKJ11_11680) luxO 2486931..2488328 (-) 1398 WP_062462808.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  JKJ11_RS11695 (JKJ11_11685) uvrB 2488461..2490491 (-) 2031 WP_096442393.1 excinuclease ABC subunit UvrB -
  JKJ11_RS11705 (JKJ11_11695) rsxA 2491595..2492176 (+) 582 WP_006072943.1 electron transport complex subunit RsxA -
  JKJ11_RS11710 (JKJ11_11700) rsxB 2492176..2492757 (+) 582 WP_006072942.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51660.90 Da        Isoelectric Point: 5.2425

>NTDB_id=526335 JKJ11_RS11690 WP_062462808.1 2486931..2488328(-) (luxO) [Vibrio sp. SCSIO 43133]
MQQLFDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLAHRTPDLILLDLRLPDMTGMDVLDAVKEFN
PDVPVIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRNEINDSSSQNYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
REEDVIEIAYSLLGFMSHEEGKSFVRFAQDVIDRFIQYEWPGNVRQLQNVLRNVVVLNQGKEIELSMLPPPLNEPAVKPA
NSSNVVSVSFGPQDIQPLWKTEKTTIEQAIEACDGNIPQAAKHLDVSPSTIYRKIQAWNASEKKA

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=526335 JKJ11_RS11690 WP_062462808.1 2486931..2488328(-) (luxO) [Vibrio sp. SCSIO 43133]
ATGCAACAACTATTCGACGAGCCCAAGTCTCGCTATCTACTTATGGTAGAAGACACGGCTTCCGTTGCTGCGCTGTATCG
CTCATATCTATCTCCATTGGGTATAGATATCAATATCGTTGGAAACGGTAGAGATGCAATTCAAAGTTTAGCGCACCGGA
CGCCTGACCTCATTCTACTGGATTTACGACTTCCCGACATGACGGGTATGGATGTATTGGACGCTGTAAAAGAATTCAAT
CCCGATGTACCTGTCATCTTTATGACAGCTCATGGTTCTATCGACATTGCGGTAGACGCTATGCAGCATGGCGCGCAGGA
CTTTTTAATCAAACCGTGCGAAGCCGACCGACTTCGCGTGACGGTAACCAACGCCATCCGCAAAGCTTCTAAGCTACGTA
ATGAGATTAATGATTCTAGTAGCCAAAACTACCAAGGATTCATTGGCAGCAGCCAACCTATGCAAGCGGTTTACCGCACT
ATTGACTCTGCCGCTTCCAGTAAGGCCAGTATCTTTATTACTGGAGAAAGTGGTACAGGTAAGGAAGTGTGCGCAGAGGC
GATCCACGCTGCGAGTAAACGAGGCGATAAGCCATTTATTGCGATCAACTGTGCCGCCATACCAAAAGATCTTATTGAGA
GTGAGCTGTTTGGTCATGTCAAAGGTGCCTTTACTGGGGCGGCAAGTGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGCTGTTTCTTGATGAGCTCTGTGAAATGGATCTTGATCTACAAACTAAACTACTGCGCTTTATTCAAACGGGTAC
CTTCCAAAAAGTGGGGTCTTCACGTATGAAGAAAGTGGATGTACGTTTCGTATGTGCGACCAACCGAGATCCTTGGAAAG
AAGTACAAGAAGGGCGATTTAGAGAAGATTTATACTACCGACTTTATGTTATCCCTCTTCATTTGCCACCGCTTCGAGAG
CGTGAAGAAGATGTGATTGAAATTGCCTACTCGTTATTAGGCTTTATGTCGCATGAAGAAGGTAAGAGTTTTGTGCGCTT
TGCTCAAGACGTCATTGACCGCTTCATTCAGTACGAGTGGCCAGGTAATGTCCGCCAATTGCAGAATGTATTGCGCAATG
TGGTGGTATTGAATCAGGGTAAAGAAATAGAGTTAAGTATGTTGCCGCCGCCTTTGAATGAGCCAGCGGTTAAGCCCGCA
AACTCAAGTAATGTGGTATCAGTATCATTTGGGCCACAGGACATCCAACCTTTGTGGAAAACTGAAAAAACCACCATAGA
GCAAGCGATAGAAGCGTGTGACGGTAACATTCCACAAGCAGCGAAACACTTGGACGTGAGTCCCTCGACAATCTACCGCA
AAATACAGGCATGGAATGCAAGCGAGAAGAAAGCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.111

96.774

0.804
  pilR Pseudomonas aeruginosa PAK

38.739

95.484

0.37