Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B657_RS18790 Genome accession   NC_018520
Coordinates   3576048..3576737 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis QB928     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3571048..3581737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B657_RS18755 (B657_35420) flgN 3571228..3571710 (-) 483 WP_003227999.1 flagellar protein FlgN -
  B657_RS18760 (B657_35430) flgM 3571726..3571992 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  B657_RS18765 (B657_35440) yvyF 3572073..3572492 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  B657_RS18770 (B657_35450) comFC 3572566..3573288 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  B657_RS18775 (B657_35460) comFB 3573252..3573548 (-) 297 WP_003227989.1 late competence protein ComFB -
  B657_RS18780 (B657_35470) comFA 3573608..3574999 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  B657_RS18785 (B657_35480) fakBA 3575105..3575950 (-) 846 WP_003244125.1 DegV family protein -
  B657_RS18790 (B657_35490) degU 3576048..3576737 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  B657_RS18795 (B657_35500) degS 3576820..3577977 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  B657_RS18800 (B657_35510) yvyE 3578194..3578847 (+) 654 WP_003227979.1 YigZ family protein -
  B657_RS18805 (B657_35520) tagV 3578847..3580022 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  B657_RS18810 (B657_35530) tagO 3580095..3581171 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=52633 B657_RS18790 WP_003219701.1 3576048..3576737(-) (degU) [Bacillus subtilis QB928]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=52633 B657_RS18790 WP_003219701.1 3576048..3576737(-) (degU) [Bacillus subtilis QB928]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment