Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JJN14_RS08830 Genome accession   NZ_CP067992
Coordinates   1802703..1804472 (-) Length   589 a.a.
NCBI ID   WP_201058456.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797703..1809472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08800 (JJN14_08800) - 1798146..1798511 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  JJN14_RS08805 (JJN14_08805) rpmB 1798667..1798855 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  JJN14_RS08810 (JJN14_08810) - 1798962..1799636 (-) 675 WP_125415574.1 LiaF transmembrane domain-containing protein -
  JJN14_RS08815 (JJN14_08815) - 1799641..1800087 (-) 447 WP_201058453.1 LytTR family DNA-binding domain-containing protein -
  JJN14_RS08820 (JJN14_08820) - 1800201..1800704 (-) 504 WP_201058454.1 phosphatase PAP2 family protein -
  JJN14_RS08825 (JJN14_08825) rcrQ 1800953..1802713 (-) 1761 WP_201058455.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS08830 (JJN14_08830) rcrP 1802703..1804472 (-) 1770 WP_201058456.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS08835 (JJN14_08835) - 1804447..1804917 (-) 471 WP_201058457.1 MarR family winged helix-turn-helix transcriptional regulator -
  JJN14_RS08840 (JJN14_08840) - 1805132..1805773 (+) 642 WP_201059157.1 DUF4190 domain-containing protein -
  JJN14_RS08845 (JJN14_08845) - 1805829..1806545 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -
  JJN14_RS08850 (JJN14_08850) - 1806642..1808012 (-) 1371 WP_201058458.1 MATE family efflux transporter -
  JJN14_RS08855 (JJN14_08855) recA 1808127..1809281 (-) 1155 WP_201058459.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65435.84 Da        Isoelectric Point: 6.7738

>NTDB_id=526176 JJN14_RS08830 WP_201058456.1 1802703..1804472(-) (rcrP) [Streptococcus mitis strain S022-V7-A3]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPAGMMVGMSFFAFLSAVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTILMTLAFPKQSLIQSLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAATARLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQQADENLKGQVEYKDVTFRYAANSEAVIEHVSFKAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSAGEILV
DGVNVQDYDLKDLRNKIGYIPQKAVLFSGDVKGNLDFGHSQETPLNEQAMWQALELAQSKNFIEDKEAGLVSEVAQGGSN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=526176 JJN14_RS08830 WP_201058456.1 1802703..1804472(-) (rcrP) [Streptococcus mitis strain S022-V7-A3]
ATGAAGAAATTAGCAAAACGAATTAGTAGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGCTTTTCGGT
CTATCTAGAGCTGGAAGTGCCGACCTATATCTCGAAAATTACGGATTTGCTAGGAAGTCAAGGAACCAACTTGGATGAGT
TATGGCAACCAGCAGGTATGATGGTCGGAATGTCTTTTTTTGCCTTCTTGTCCGCAGTCGCAGTTGGATTTTTTGCATCC
AGAGTGGCTGCTTCTTATACTAGTAGGCTGAGAAGTGACATTTTTAACCGAGTTTTAGACTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCCAGTCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAGATGTTGATTACCATGGGCTTGC
AAGTAGTTACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGCCATTCGGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTTTTAATGACGACTATTTTGATGACGTTAGCCTTTCCAAAACAGTCCTTGATTCA
AAGTCTGACTGATAAACTGAACAGTATCACTCGTGAAAGTTTAACAGGTATTCGTGTCGTTCGCGCCTACAATGCAGAGG
ATTACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCCATT
CTAAATCCAATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTAATCAACGACGC
TGCTGCGACAGCGCGTCTGCCTCTCTTTAGTGACATGGTCGTTTTCATGTCTTATGCCATGCAGGTTGTCATGGGATTTC
TTCTCATGGGGGCGCTCTTTATCGTTCTTCCCCGAACCATGGTATCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCGTCTATCCAAAATCCTGCCCAAGTGCAGCAGGCTGATGAAAACCTCAAAGGACAGGTCGAATATAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCAGTTATCGAGCATGTTAGCTTTAAAGCAGAAGCGGGTCAAACAGTGGCCTTTATTG
GGTCGACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTA
GATGGTGTCAATGTTCAAGACTATGACTTGAAAGATTTGCGCAACAAGATTGGTTATATTCCTCAGAAAGCGGTTCTCTT
TTCAGGTGATGTTAAGGGCAATTTGGACTTTGGACACAGTCAAGAAACACCGCTGAATGAACAAGCTATGTGGCAAGCCT
TGGAATTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTGGTCTCAGAAGTGGCCCAAGGAGGAAGCAAC
TTCTCAGGTGGACAAAGACAGCGTCTGGCCATTGCTCGTGCCTTGGCTCGGAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACCAAGTCTATGACCAAGCTTA
TCGTTGCACAGCGTATTTCAACGATTATGGATGCAGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.057

100

0.674