Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JJN14_RS08825 Genome accession   NZ_CP067992
Coordinates   1800953..1802713 (-) Length   586 a.a.
NCBI ID   WP_201058455.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795953..1807713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08785 (JJN14_08785) - 1795969..1796148 (-) 180 WP_201058451.1 hypothetical protein -
  JJN14_RS08790 (JJN14_08790) - 1796145..1796336 (-) 192 WP_012972435.1 hypothetical protein -
  JJN14_RS08795 (JJN14_08795) - 1796476..1798143 (-) 1668 WP_201058452.1 DAK2 domain-containing protein -
  JJN14_RS08800 (JJN14_08800) - 1798146..1798511 (-) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  JJN14_RS08805 (JJN14_08805) rpmB 1798667..1798855 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  JJN14_RS08810 (JJN14_08810) - 1798962..1799636 (-) 675 WP_125415574.1 LiaF transmembrane domain-containing protein -
  JJN14_RS08815 (JJN14_08815) - 1799641..1800087 (-) 447 WP_201058453.1 LytTR family DNA-binding domain-containing protein -
  JJN14_RS08820 (JJN14_08820) - 1800201..1800704 (-) 504 WP_201058454.1 phosphatase PAP2 family protein -
  JJN14_RS08825 (JJN14_08825) rcrQ 1800953..1802713 (-) 1761 WP_201058455.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS08830 (JJN14_08830) rcrP 1802703..1804472 (-) 1770 WP_201058456.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS08835 (JJN14_08835) - 1804447..1804917 (-) 471 WP_201058457.1 MarR family winged helix-turn-helix transcriptional regulator -
  JJN14_RS08840 (JJN14_08840) - 1805132..1805773 (+) 642 WP_201059157.1 DUF4190 domain-containing protein -
  JJN14_RS08845 (JJN14_08845) - 1805829..1806545 (-) 717 WP_000532877.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64563.36 Da        Isoelectric Point: 4.8981

>NTDB_id=526175 JJN14_RS08825 WP_201058455.1 1800953..1802713(-) (rcrQ) [Streptococcus mitis strain S022-V7-A3]
MENKKMSLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRTAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFVFVSVFMGKSQGFFKSQQQDLATVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALSGHISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKAIQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
ICIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQAGFYADLYNSQFTEDQAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=526175 JJN14_RS08825 WP_201058455.1 1800953..1802713(-) (rcrQ) [Streptococcus mitis strain S022-V7-A3]
ATGGAAAATAAGAAAATGTCTCTCTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTAATCGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACTAATATTATTGCCAGTG
GTCTAGAAACAAGTGTGGATGTCGCGGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATCGGACTTCTA
TCAAATTATTTACAGGCATTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAGCGTTTGAGAACAGCCATTGCAGAGAA
AATCAATCGCCTACCATTGGGATATTTTGATGGACACTCTCAGGGGGATACTTTGTCTCGTGTGACCAATGACGTTGACA
CTGCAGCCCAGTCCCTCAATCAAAGTCTAGGAACAGTTCTTTCATCTAGTTTACTGGTCGTGGCAGTCTTGGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACCCTTATTGGTTTTGTTTTCGTGTCCGTCTTTATGGG
CAAATCACAGGGCTTTTTTAAGAGTCAGCAACAAGATTTGGCAACTGTCAATGGCTATGTGGAGGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCTATCGAGAGTACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCCTAGTGAT
TATTGTTGGTGCAGCCTTGGCTTTAAGTGGACACATCAGTATCGGGATTATCGTTGCCTTTATGGCCTATGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATTGCCCAAGGAATTACTAGTCTGCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTTCTAGCTGAAGAGGAGATGGAAGATGAATCCCATAAAGCAATCCAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
TCGAGTCTCCTTTGGTTATACACCAGAGCGAACTATTATCCATGACTTTTCTGCGACCGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACAGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATCTGCATCGATGGTGTGGATACCAAAGAGATGAAGCGTTCGGAAGTACATGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGAACCATTCGCGACAATCTTATCTATAACCAAAAGGGGATTAGTGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATTATGACCCTACCAGATGGTTATGATACAGTCTTGGACGACACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACTATCGCTCGTGCTTTGCTGAAAGATGCGCCGCTCTTGATTTTAGATGAGGCGAC
CTCTTCGGTTGATACTCGGACGGAAGAATTAATCCAGAAAGCCATGGATCGTTTGATGGAAGGCAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCTACTATCCGAAATGCTGACTTGATTCTTGTCATGAAAGATGGAAATATCATCGAGCAAGGAAAT
CATGATGAGCTAATGGCGCAAGCTGGCTTCTATGCTGATTTGTATAACAGTCAATTTACAGAAGACCAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.952

99.659

0.667