Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   JJN14_RS03185 Genome accession   NZ_CP067992
Coordinates   605946..607178 (+) Length   410 a.a.
NCBI ID   WP_201058888.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 600946..612178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS03150 (JJN14_03150) galE 601643..602662 (+) 1020 WP_024057477.1 UDP-glucose 4-epimerase GalE -
  JJN14_RS03155 (JJN14_03155) - 602664..603629 (+) 966 WP_201058885.1 glycosyltransferase family 2 protein -
  JJN14_RS03160 (JJN14_03160) - 603687..603884 (-) 198 WP_004235080.1 ferredoxin -
  JJN14_RS03165 (JJN14_03165) - 603930..604430 (+) 501 WP_094753757.1 SAG1386/EF1546 family surface-associated protein -
  JJN14_RS03170 (JJN14_03170) cmk 604439..605113 (+) 675 WP_201058886.1 (d)CMP kinase -
  JJN14_RS03175 (JJN14_03175) - 605233..605739 (+) 507 WP_201058887.1 dihydrofolate reductase -
  JJN14_RS03180 (JJN14_03180) - 605739..605909 (+) 171 WP_000442260.1 hypothetical protein -
  JJN14_RS03185 (JJN14_03185) clpX 605946..607178 (+) 1233 WP_201058888.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  JJN14_RS03190 (JJN14_03190) yihA 607187..607774 (+) 588 WP_000405202.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JJN14_RS03195 (JJN14_03195) - 607785..608165 (+) 381 WP_001140420.1 RidA family protein -
  JJN14_RS03200 (JJN14_03200) rapZ 608217..609107 (+) 891 WP_020903049.1 RNase adapter RapZ -
  JJN14_RS03205 (JJN14_03205) - 609104..610081 (+) 978 WP_001231075.1 YvcK family protein -
  JJN14_RS03210 (JJN14_03210) whiA 610078..610989 (+) 912 WP_049540853.1 DNA-binding protein WhiA -
  JJN14_RS03215 (JJN14_03215) - 611021..611989 (-) 969 WP_064275963.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45780.29 Da        Isoelectric Point: 4.4550

>NTDB_id=526147 JJN14_RS03185 WP_201058888.1 605946..607178(+) (clpX) [Streptococcus mitis strain S022-V7-A3]
MPTNRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGRAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=526147 JJN14_RS03185 WP_201058888.1 605946..607178(+) (clpX) [Streptococcus mitis strain S022-V7-A3]
ATGCCTACAAATAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGAGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATCGAACTCCTCCATATCTTGAACCACTATGTAATCGGTCAAGATCGT
GCTAAACGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAACGTATTAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGACCAACTGGTTCAGGGAAAACTTTCCTTGCTCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATTGCAGATGCGACAGCTCTGACTGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTTCTCAAACTATTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAGCGTGGGATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAAAGCGAGAACGTTTCTATCACACGTGATGTTTCTGGTGAAGGGGTACAACAAGCCCTTCTCAAGA
TTATCGAGGGAACCGTTGCCAGCGTACCACCTCAAGGTGGACGTAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTCGTGCCTTTGATGGTATCGAAGAAATTGTCAAACAACGTCTTGGAGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAAGCGATTGATGAAAACAGCTCATACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCAGAGTTGATTGGGCGCTTGCCAGTCTTTGCAGCTCTGGAGCAATTGACAGTGGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAAATCGCCAATAAGGCCATCGAACGGAAGACAGGTGCGCGTGGTCTTCGCTCAATTATTGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCTTGGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561