Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   JJL48_RS00230 Genome accession   NZ_CP067416
Coordinates   51873..53222 (-) Length   449 a.a.
NCBI ID   WP_196968677.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain TET2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 46873..58222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL48_RS00200 (JJL48_00200) - 47211..48023 (-) 813 WP_201101500.1 DUF6994 family protein -
  JJL48_RS00205 (JJL48_00205) - 48251..48472 (-) 222 WP_201101502.1 hypothetical protein -
  JJL48_RS00210 (JJL48_00210) - 48487..48990 (-) 504 WP_201101504.1 DUF1643 domain-containing protein -
  JJL48_RS00215 (JJL48_00215) - 49010..49321 (-) 312 WP_201101506.1 DUF960 family protein -
  JJL48_RS00220 (JJL48_00220) - 49406..49756 (-) 351 WP_196968679.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JJL48_RS00225 (JJL48_00225) ccrB 50224..51852 (-) 1629 WP_196968678.1 cassette chromosome recombinase CcrB Machinery gene
  JJL48_RS00230 (JJL48_00230) ccrA 51873..53222 (-) 1350 WP_196968677.1 cassette chromosome recombinase CcrA Machinery gene
  JJL48_RS00235 (JJL48_00235) - 53401..53691 (-) 291 WP_065381418.1 hypothetical protein -
  JJL48_RS00240 (JJL48_00240) cch1 53782..55575 (-) 1794 WP_065381419.1 cassette chromosome replicative helicase -
  JJL48_RS00245 (JJL48_00245) ssb 55575..55865 (-) 291 WP_065381598.1 cassette chromosome ssDNA-binding protein -
  JJL48_RS00250 (JJL48_00250) - 56024..57568 (-) 1545 WP_181188824.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52410.13 Da        Isoelectric Point: 10.0666

>NTDB_id=525978 JJL48_RS00230 WP_196968677.1 51873..53222(-) (ccrA) [Mammaliicoccus sciuri strain TET2]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHITFYSDKQSGRTDNRTGYQQVIERIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLREKAKQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQDYGYKKIAQYLEKDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQAIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHMLRYYTCPQNMNASSFVCAFKGINAQVLETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDIEAKYTLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLHPYIDEIRITKNKALVGIYFKNEPLNIVNQKTQSSID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=525978 JJL48_RS00230 WP_196968677.1 51873..53222(-) (ccrA) [Mammaliicoccus sciuri strain TET2]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACTGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATTCAACACATCACCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACGGGTT
ACCAACAAGTTATCGAACGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTAAATCGATTACATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAATATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAGCTCAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAAAATGGACTTAGAGAAAAGGCAAAACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGGCAATATTCCATTACTACTTACAAGACTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAAAAGATGATAAATGTATTAATCGTAAACCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGCAATACGGTCACAAAAACATACCAAACGGACTCCATCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATATGTTACGTTATTATACTTGTCCTC
AAAATATGAATGCATCAAGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGGACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCATACAATTCAACAACGACTCAAAAGACAAAGGGA
CATAGAAGCTAAATATACACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAACCATATCCTCAATAAGTGATACTCAGTTGCAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCGCATTACTAAAAACAAAGCCCT
TGTTGGAATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAAAAACACAATCATCGATTGATTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

81.696

99.777

0.815
  ccrA Staphylococcus aureus N315

72.991

99.777

0.728