Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   JJL48_RS00225 Genome accession   NZ_CP067416
Coordinates   50224..51852 (-) Length   542 a.a.
NCBI ID   WP_196968678.1    Uniprot ID   A0A1W2KRV8
Organism   Mammaliicoccus sciuri strain TET2     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45224..56852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL48_RS00195 (JJL48_00195) - 46263..46938 (+) 676 WP_201101498.1 IS6 family transposase -
  JJL48_RS00200 (JJL48_00200) - 47211..48023 (-) 813 WP_201101500.1 DUF6994 family protein -
  JJL48_RS00205 (JJL48_00205) - 48251..48472 (-) 222 WP_201101502.1 hypothetical protein -
  JJL48_RS00210 (JJL48_00210) - 48487..48990 (-) 504 WP_201101504.1 DUF1643 domain-containing protein -
  JJL48_RS00215 (JJL48_00215) - 49010..49321 (-) 312 WP_201101506.1 DUF960 family protein -
  JJL48_RS00220 (JJL48_00220) - 49406..49756 (-) 351 WP_196968679.1 SAUGI family uracil-DNA glycosylase inhibitor -
  JJL48_RS00225 (JJL48_00225) ccrB 50224..51852 (-) 1629 WP_196968678.1 cassette chromosome recombinase CcrB Machinery gene
  JJL48_RS00230 (JJL48_00230) ccrA 51873..53222 (-) 1350 WP_196968677.1 cassette chromosome recombinase CcrA Machinery gene
  JJL48_RS00235 (JJL48_00235) - 53401..53691 (-) 291 WP_065381418.1 hypothetical protein -
  JJL48_RS00240 (JJL48_00240) cch1 53782..55575 (-) 1794 WP_065381419.1 cassette chromosome replicative helicase -
  JJL48_RS00245 (JJL48_00245) ssb 55575..55865 (-) 291 WP_065381598.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62690.91 Da        Isoelectric Point: 9.7878

>NTDB_id=525977 JJL48_RS00225 WP_196968678.1 50224..51852(-) (ccrB) [Mammaliicoccus sciuri strain TET2]
MQQLKQKRVGIYVRVSTEIQSSEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMKRPELQRLLKDANEGHLDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQVLEIVKCDKVINKVLERVNQENKVDIGALNHDIAYKQQQYD
EIHAKLDNLIKTIEDNPDLTTILKETIHKYKTQLTDITNQINQLKQQQYQEKTSYDTKQISAILRRIFQNVESMDKSQLK
ALYLTVIDRIDIRKDINHKKQFYVTLKLNNEIIKQLFNNILIDEVLLSTSSLFLPQTIYLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=525977 JJL48_RS00225 WP_196968678.1 50224..51852(-) (ccrB) [Mammaliicoccus sciuri strain TET2]
ATGCAACAACTCAAACAAAAACGTGTCGGTATATATGTTCGTGTATCAACGGAAATCCAAAGTTCTGAAGGCTATAGCAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAAACGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCATCTCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCCAATATTGTAAAATA
TATATTTGAGTCATATGCTAAAGGTCATGGTTATCGTAAAATAGCCAATGCCCTCAATCACAAAGGCTATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAGGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACAACAAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGTTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGACGTAATTGAGAAATACGTTATGGATCAAGTACTCGAAATTGTCAAATGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATCGCTTATAAACAACAACAATACGAT
GAAATCCATGCGAAACTAGACAACTTGATTAAAACCATTGAAGATAATCCAGACTTAACAACAATACTCAAAGAAACAAT
CCATAAATATAAAACACAACTGACTGACATTACGAATCAAATTAATCAACTTAAGCAACAACAATATCAAGAGAAAACAT
CATATGATACGAAACAAATATCTGCTATTTTACGTCGCATATTTCAAAACGTAGAATCCATGGATAAGTCACAACTCAAA
GCATTATATCTCACAGTCATTGACCGAATCGATATTCGTAAAGATATTAATCATAAGAAACAATTTTATGTCACACTCAA
GCTTAATAATGAAATTATCAAACAACTTTTCAATAATATCCTTATCGACGAAGTGCTACTCAGCACTTCGTCTTTATTTT
TACCTCAAACTATTTATCTTCAAATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W2KRV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.502

100

0.845