Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JHT90_RS12740 Genome accession   NZ_CP067393
Coordinates   2734829..2736232 (+) Length   467 a.a.
NCBI ID   WP_201091601.1    Uniprot ID   -
Organism   Entomomonas asaccharolytica strain F2A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2729829..2741232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT90_RS12710 (JHT90_12710) ubiB 2729830..2731440 (+) 1611 WP_201091592.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  JHT90_RS12715 (JHT90_12715) hisI 2731449..2731841 (+) 393 WP_201091595.1 phosphoribosyl-AMP cyclohydrolase -
  JHT90_RS12720 (JHT90_12720) - 2731846..2732178 (+) 333 WP_201091596.1 phosphoribosyl-ATP diphosphatase -
  JHT90_RS12725 (JHT90_12725) - 2732190..2732900 (+) 711 WP_201091597.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JHT90_RS12730 (JHT90_12730) - 2732981..2733205 (+) 225 WP_201091598.1 PP0621 family protein -
  JHT90_RS12735 (JHT90_12735) - 2733207..2734817 (+) 1611 WP_201091599.1 PAS domain-containing sensor histidine kinase -
  JHT90_RS12740 (JHT90_12740) pilR 2734829..2736232 (+) 1404 WP_201091601.1 sigma-54 dependent transcriptional regulator Regulator
  JHT90_RS12745 (JHT90_12745) - 2736249..2737115 (+) 867 WP_201091603.1 LysR family transcriptional regulator -
  JHT90_RS12750 (JHT90_12750) - 2737265..2738776 (+) 1512 WP_201091605.1 ATP-binding cassette domain-containing protein -
  JHT90_RS12755 (JHT90_12755) - 2738930..2739340 (+) 411 WP_201091607.1 hypothetical protein -
  JHT90_RS12760 (JHT90_12760) ahcY 2739645..2741042 (+) 1398 WP_201091609.1 adenosylhomocysteinase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52182.86 Da        Isoelectric Point: 4.9448

>NTDB_id=525829 JHT90_RS12740 WP_201091601.1 2734829..2736232(+) (pilR) [Entomomonas asaccharolytica strain F2A]
MTQSKILIIDDEPDIRELLEITLGRLKLATQSVGTLKEATEILKKETFDLCLTDMKLPDGDGLDFIEYTQQHYPQMPIAM
ITAHGSMDTAIIALKAGAFDYLTKPIDLNHLREIIKSALNLTTAKVDNIPFEQQFLGDSPLVQALRSQVNKVARSQAPVY
INGESGTGKEVIARLIHLQGPRAKQPFIAINCGAIPSELMESEFFGHRKGSFTGANQDKIGLFQAAQGGTLFLDEVADLP
LSMQVKLLRAIQEKSIRAIGDQQEQPIDVRILCATHADLAARVVEGKFRQDLYYRLNVIELKIPPLRDHKEDIPLLADAL
LKRANYDVKLSDEAIEKLLTYEFPGNVRELENILERAYTLCEQGVIRPDDLRFASMLPSDSSVTSTATVNTPITQSIPSQ
TEDSSIAEDKLPNLVDIGNLEEYLEAVERKILTQALEENRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=525829 JHT90_RS12740 WP_201091601.1 2734829..2736232(+) (pilR) [Entomomonas asaccharolytica strain F2A]
ATGACACAGTCAAAAATTTTAATTATTGATGATGAACCTGATATTCGAGAATTACTTGAAATTACTCTAGGTCGACTAAA
ATTAGCTACTCAATCAGTAGGTACGCTAAAAGAAGCAACTGAAATACTAAAGAAAGAAACCTTTGATCTCTGCCTAACGG
ACATGAAACTTCCTGATGGTGATGGTCTTGACTTTATTGAGTATACGCAACAGCATTATCCACAAATGCCTATTGCTATG
ATTACCGCCCATGGCAGTATGGATACAGCCATTATCGCTTTAAAAGCTGGGGCTTTTGATTATTTAACAAAACCCATTGA
TTTAAACCATTTACGAGAAATTATCAAATCAGCACTTAACCTAACTACTGCCAAAGTTGATAATATTCCTTTTGAACAAC
AATTCCTTGGTGACTCTCCACTAGTCCAAGCACTTCGTAGTCAAGTAAACAAAGTGGCACGTAGCCAAGCACCCGTTTAT
ATTAATGGTGAATCTGGAACGGGGAAAGAAGTAATCGCTCGACTCATTCATTTACAAGGGCCTAGAGCTAAGCAGCCGTT
TATTGCTATCAACTGTGGGGCTATTCCCTCTGAGTTGATGGAAAGCGAATTCTTTGGTCATCGCAAAGGTAGTTTTACTG
GTGCCAACCAAGATAAAATAGGCTTATTCCAAGCGGCACAAGGTGGCACATTATTTTTAGATGAGGTGGCCGATTTACCA
CTCAGCATGCAAGTAAAACTATTGCGCGCTATCCAAGAAAAATCTATTCGTGCTATTGGCGATCAACAAGAACAACCTAT
TGATGTACGTATTCTTTGTGCTACCCATGCCGACTTAGCCGCAAGAGTAGTCGAAGGCAAGTTTAGACAAGATCTTTATT
ACCGCCTTAATGTTATTGAATTAAAAATTCCGCCATTACGCGACCATAAAGAAGATATTCCGCTATTGGCTGATGCACTG
TTAAAACGTGCTAACTACGATGTTAAGCTTTCCGATGAAGCCATTGAAAAATTATTGACTTATGAATTCCCAGGCAATGT
ACGAGAACTTGAGAATATACTTGAACGTGCTTATACACTCTGTGAACAGGGTGTAATCAGGCCCGATGACCTTCGTTTTG
CTAGTATGTTACCAAGTGACTCATCGGTGACCTCTACTGCCACTGTTAACACACCAATTACTCAATCAATACCTTCACAA
ACTGAAGATAGTTCTATTGCAGAAGATAAACTGCCTAATTTAGTAGATATTGGTAATTTAGAAGAATATCTTGAAGCCGT
TGAAAGAAAAATTTTAACCCAAGCGCTTGAGGAAAACCGTTGGAATAGAACAGCTGCAGCTGAACGCTTAGGATTATCTT
TCCGTTCTATGCGCTACCGACTAAAAAAATTAGGCATTGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.559

100

0.642
  pilR Acinetobacter baumannii strain A118

47.78

100

0.484
  luxO Vibrio cholerae strain A1552

37.716

99.358

0.375