Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   T15_RS11130 Genome accession   NC_022665
Coordinates   2226338..2227432 (+) Length   364 a.a.
NCBI ID   WP_023371886.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2221338..2232432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS11105 (T15_2226) pgsA 2221857..2222396 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  T15_RS11110 (T15_2227) rodZ 2222406..2223263 (-) 858 WP_023371884.1 cytoskeleton protein RodZ -
  T15_RS11115 (T15_2228) yfmH 2223345..2224628 (-) 1284 WP_012775413.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  T15_RS11120 (T15_2229) yfmF 2224625..2225878 (-) 1254 WP_012028048.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  T15_RS11125 (T15_2230) yaaA 2225952..2226335 (+) 384 WP_012028049.1 S4 domain-containing protein YaaA -
  T15_RS11130 (T15_2231) recF 2226338..2227432 (+) 1095 WP_023371886.1 DNA replication/repair protein RecF Machinery gene
  T15_RS11135 (T15_2232) guaB 2227704..2229185 (-) 1482 WP_023371888.1 IMP dehydrogenase -
  T15_RS11140 (T15_2233) trpS 2229422..2230447 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  T15_RS11145 (T15_2235) - 2230802..2231674 (+) 873 WP_013730698.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42187.29 Da        Isoelectric Point: 7.2330

>NTDB_id=52572 T15_RS11130 WP_023371886.1 2226338..2227432(+) (recF) [Streptococcus suis T15]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIKYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=52572 T15_RS11130 WP_023371886.1 2226338..2227432(+) (recF) [Streptococcus suis T15]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAATGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCAAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTATCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.784

100

0.445