Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FJQ98_RS26410 Genome accession   NZ_CP067341
Coordinates   5267879..5268448 (-) Length   189 a.a.
NCBI ID   WP_053595911.1    Uniprot ID   -
Organism   Lysinibacillus agricola strain FJAT-51161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5262879..5273448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJQ98_RS26385 (FJQ98_26385) - 5263311..5263937 (-) 627 WP_053595915.1 hypothetical protein -
  FJQ98_RS26390 (FJQ98_26390) - 5263919..5264791 (-) 873 WP_053595914.1 ATP-binding cassette domain-containing protein -
  FJQ98_RS26395 (FJQ98_26395) - 5264778..5266598 (-) 1821 WP_053595913.1 hypothetical protein -
  FJQ98_RS26400 (FJQ98_26400) - 5266694..5267080 (-) 387 WP_053595912.1 hypothetical protein -
  FJQ98_RS26405 (FJQ98_26405) rpsR 5267604..5267840 (-) 237 WP_004233359.1 30S ribosomal protein S18 -
  FJQ98_RS26410 (FJQ98_26410) ssbA 5267879..5268448 (-) 570 WP_053595911.1 single-stranded DNA-binding protein Machinery gene
  FJQ98_RS26415 (FJQ98_26415) rpsF 5268493..5268780 (-) 288 WP_053595910.1 30S ribosomal protein S6 -
  FJQ98_RS26420 (FJQ98_26420) - 5268954..5269514 (+) 561 WP_053595909.1 DUF3267 domain-containing protein -
  FJQ98_RS26425 (FJQ98_26425) - 5269621..5270664 (-) 1044 WP_053595908.1 acyl-CoA dehydrogenase -
  FJQ98_RS26430 (FJQ98_26430) ychF 5270755..5271855 (-) 1101 WP_053595907.1 redox-regulated ATPase YchF -
  FJQ98_RS26435 (FJQ98_26435) - 5272011..5272211 (-) 201 WP_053595906.1 DUF951 domain-containing protein -
  FJQ98_RS26440 (FJQ98_26440) - 5272213..5273100 (-) 888 WP_082340225.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20549.50 Da        Isoelectric Point: 4.7719

>NTDB_id=525505 FJQ98_RS26410 WP_053595911.1 5267879..5268448(-) (ssbA) [Lysinibacillus agricola strain FJAT-51161]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRTFSNQQGEREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGSGAPASPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSFGGDSYQQNQPPV
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=525505 FJQ98_RS26410 WP_053595911.1 5267879..5268448(-) (ssbA) [Lysinibacillus agricola strain FJAT-51161]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTACGCTATACACCGAATGGGGTTGCGTCTAC
ACGATTTACAGTTGCTGTGAATCGAACATTCTCAAACCAACAAGGTGAACGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGCAAACAGGCTGAAAACCTAGCGAACTTCATGCGAAAAGGAAGTTTAATTGGAGTGGAAGGTCGCATTCAAACAGGT
AGCTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTAGTGGCAGATAGCGTACAGTTTTTAGAACCTCGTAG
TGGTAGCGGTGCTCCTGCATCTCCTCAATACGGTGGACAGACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGTGCTATGCCAGGGCAGGGTTCATTTGGCGGCGATTCTTATCAGCAAAATCAACCACCTGTG
AATCAGCCGAACTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCTGAGGACGATTT
ACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.968

100

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

47.692

100

0.492