Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K6125_RS13425 Genome accession   NZ_CP082077
Coordinates   2746393..2747130 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MS20657     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2741393..2752130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6125_RS13410 (K6125_13330) clpC 2741847..2744420 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  K6125_RS13415 (K6125_13335) yfiH 2744550..2745281 (-) 732 WP_000040145.1 purine nucleoside phosphorylase YfiH -
  K6125_RS13420 (K6125_13340) rluD 2745278..2746258 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K6125_RS13425 (K6125_13345) comL 2746393..2747130 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K6125_RS13430 (K6125_13350) raiA 2747400..2747741 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K6125_RS13435 (K6125_13355) pheL 2747845..2747892 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K6125_RS13440 (K6125_13360) pheA 2747990..2749150 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  K6125_RS13445 (K6125_13365) tyrA 2749193..2750314 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K6125_RS13450 (K6125_13370) aroF 2750325..2751395 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K6125_RS13455 (K6125_13375) yfiL 2751606..2751971 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=525458 K6125_RS13425 WP_000197686.1 2746393..2747130(+) (comL) [Escherichia coli strain MS20657]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=525458 K6125_RS13425 WP_000197686.1 2746393..2747130(+) (comL) [Escherichia coli strain MS20657]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376