Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   K6140_RS21410 Genome accession   NZ_CP082073
Coordinates   4403559..4404968 (-) Length   469 a.a.
NCBI ID   WP_001519369.1    Uniprot ID   -
Organism   Escherichia coli strain MS20659     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4398559..4409968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6140_RS21385 (K6140_21215) yihA 4399820..4400452 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K6140_RS21390 - 4400749..4400915 (+) 167 Protein_4191 hypothetical protein -
  K6140_RS21395 (K6140_21220) yihI 4401034..4401543 (+) 510 WP_001305065.1 Der GTPase-activating protein YihI -
  K6140_RS21400 (K6140_21225) hemN 4401732..4403105 (+) 1374 WP_000116096.1 oxygen-independent coproporphyrinogen III oxidase -
  K6140_RS21405 (K6140_21230) yshB 4403337..4403447 (-) 111 WP_000893994.1 YshB family small membrane protein -
  K6140_RS21410 (K6140_21235) luxO 4403559..4404968 (-) 1410 WP_001519369.1 nitrogen regulation protein NR(I) Regulator
  K6140_RS21415 (K6140_21240) glnL 4404980..4406029 (-) 1050 WP_000190574.1 nitrogen regulation protein NR(II) -
  K6140_RS21420 (K6140_21245) glnA 4406203..4407612 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  K6140_RS21425 (K6140_21250) typA 4407985..4409808 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52330.84 Da        Isoelectric Point: 6.5091

>NTDB_id=525324 K6140_RS21410 WP_001519369.1 4403559..4404968(-) (luxO) [Escherichia coli strain MS20659]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGVEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=525324 K6140_RS21410 WP_001519369.1 4403559..4404968(-) (luxO) [Escherichia coli strain MS20659]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGTGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCATTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGGATTATCGGTCGGCTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCATTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTAGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCACGCCATTTTTTACAGGTTGCCGCGCGAGAGCTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAAACGTACCGGAAAGCACTTCACACATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCACAGCC
AGAGCTGGAACGGACGTTACTGACCACCGCGCTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGCCGCAACACCCTGACGCGTAAGTTAAAAGAACTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39