Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JGR68_RS11385 Genome accession   NZ_CP067113
Coordinates   2425950..2427353 (+) Length   467 a.a.
NCBI ID   WP_199362725.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2420950..2432353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS11360 (JGR68_11360) - 2421156..2421470 (-) 315 WP_199362729.1 CcdB family protein -
  JGR68_RS11365 (JGR68_11365) - 2421467..2421733 (-) 267 WP_199362728.1 type II toxin-antitoxin system CcdA family antitoxin -
  JGR68_RS11370 (JGR68_11370) sucD 2421945..2422823 (-) 879 WP_199362727.1 succinate--CoA ligase subunit alpha -
  JGR68_RS11375 (JGR68_11375) sucC 2422849..2424015 (-) 1167 WP_199362726.1 ADP-forming succinate--CoA ligase subunit beta -
  JGR68_RS11380 (JGR68_11380) - 2424115..2425692 (+) 1578 WP_199362942.1 ATP-binding protein -
  JGR68_RS11385 (JGR68_11385) pilR 2425950..2427353 (+) 1404 WP_199362725.1 sigma-54 dependent transcriptional regulator Regulator
  JGR68_RS11390 (JGR68_11390) - 2427673..2428077 (+) 405 WP_199362724.1 pilin -
  JGR68_RS11395 (JGR68_11395) - 2428205..2428609 (+) 405 WP_199362723.1 pilin -
  JGR68_RS11400 (JGR68_11400) - 2428549..2430462 (+) 1914 WP_199362722.1 hypothetical protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 50072.17 Da        Isoelectric Point: 6.7303

>NTDB_id=525117 JGR68_RS11385 WP_199362725.1 2425950..2427353(+) (pilR) [Luteimonas sp. MC1750]
MTEARSALIVDDEHDIRELLVLTLGRMGLRTDTAASLGTARQMLAQNRYDLCLTDMRLPDGSGLELISDITTRFPETPVA
MITAYGNVEAAVEALKAGAFDFVSKPVDINVLRGLVRQALELHTRRQAQPEEAGRLLGGSPAMVALRETIAKVSRSQAPV
HISGESGTGKELVARTIHAQGSRANGPFIPVNCGAIPTELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEVAEL
PLAMQVKLLRAIQEKKVRPVGAQNEVDVDVRILSATHKDLGALVNAGSFRHDLYYRINVIELHVPALRDRDGDLPILSDA
IFARLAQAMHRAAPRLGPDALAALNEYAFPGNVRELENVLERAMAMADSDSITAADLRLPGGSGINSPARAVPQPGGLAA
HGGAANPANLNPRETASSALPSYIEEIERAAIQQALQESRYNKTKAAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=525117 JGR68_RS11385 WP_199362725.1 2425950..2427353(+) (pilR) [Luteimonas sp. MC1750]
ATGACCGAAGCCCGCAGCGCCCTCATCGTCGACGACGAGCACGACATCCGCGAGCTCCTGGTCCTGACCCTCGGGCGCAT
GGGACTCCGCACCGACACCGCCGCCAGCCTGGGCACCGCCCGGCAGATGCTCGCGCAGAACCGCTACGACCTCTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCCTCGAGCTGATCAGCGACATCACCACCCGCTTTCCCGAGACCCCCGTGGCG
ATGATCACCGCCTACGGCAACGTCGAAGCGGCGGTCGAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCCGT
GGACATCAACGTGCTGCGCGGCCTCGTGCGCCAGGCGCTCGAGCTCCACACCCGCCGCCAGGCCCAGCCCGAAGAGGCCG
GCCGCCTGCTGGGCGGCTCGCCGGCCATGGTCGCCCTGCGCGAGACCATCGCCAAGGTGTCCCGCAGCCAGGCACCCGTG
CACATCAGCGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGCACCATCCACGCCCAGGGCTCGCGCGCCAACGGCCC
CTTCATCCCGGTCAACTGCGGCGCCATCCCGACCGAGCTGATGGAGAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGAGCGCCGACGGCGGCACCCTGTTCCTGGACGAAGTGGCCGAGCTG
CCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGAAGGTGCGCCCGGTGGGCGCGCAGAACGAAGTGGA
CGTCGACGTGCGGATCCTGTCGGCGACCCACAAGGACCTCGGCGCGCTGGTGAACGCCGGCAGCTTCCGGCATGACCTTT
ACTACCGGATCAACGTGATCGAGCTGCACGTGCCGGCGCTGCGCGACCGCGACGGCGACCTGCCGATCCTGTCGGACGCG
ATTTTCGCCAGGCTGGCGCAGGCGATGCATCGCGCGGCGCCGAGGCTGGGGCCGGATGCGCTGGCGGCGTTGAACGAGTA
CGCGTTCCCCGGGAACGTGCGCGAGCTGGAGAACGTGCTGGAGCGCGCAATGGCCATGGCCGACAGCGACAGCATCACCG
CCGCCGACCTGCGCCTGCCGGGCGGGAGCGGAATCAACAGCCCGGCGCGCGCCGTGCCGCAGCCTGGCGGACTGGCCGCG
CACGGCGGCGCAGCCAATCCCGCCAACCTCAATCCCCGCGAGACCGCCTCCAGCGCCCTGCCCTCGTACATCGAGGAGAT
CGAACGAGCCGCGATCCAGCAGGCGCTCCAGGAGAGCCGCTACAACAAGACCAAGGCCGCGGCGGCCCTCGGCATCACCT
TCCGAGCCCTGCGCTACAAACTGAAAAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.944

99.786

0.608
  pilR Acinetobacter baumannii strain A118

47.957

99.572

0.478