Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JGR64_RS10930 Genome accession   NZ_CP067112
Coordinates   2381330..2382730 (+) Length   466 a.a.
NCBI ID   WP_199373405.1    Uniprot ID   -
Organism   Luteimonas sp. MC1572     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376330..2387730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR64_RS10905 (JGR64_10905) - 2376621..2376935 (-) 315 WP_199373400.1 CcdB family protein -
  JGR64_RS10910 (JGR64_10910) - 2376932..2377198 (-) 267 WP_199373401.1 type II toxin-antitoxin system CcdA family antitoxin -
  JGR64_RS10915 (JGR64_10915) sucD 2377400..2378278 (-) 879 WP_199373402.1 succinate--CoA ligase subunit alpha -
  JGR64_RS10920 (JGR64_10920) sucC 2378332..2379498 (-) 1167 WP_199373403.1 ADP-forming succinate--CoA ligase subunit beta -
  JGR64_RS10925 (JGR64_10925) - 2379673..2381262 (+) 1590 WP_199373404.1 ATP-binding protein -
  JGR64_RS10930 (JGR64_10930) pilR 2381330..2382730 (+) 1401 WP_199373405.1 sigma-54 dependent transcriptional regulator Regulator
  JGR64_RS10935 (JGR64_10935) - 2382761..2383492 (-) 732 WP_199373406.1 methyltransferase domain-containing protein -
  JGR64_RS10940 (JGR64_10940) - 2383489..2384148 (-) 660 WP_199373407.1 class I SAM-dependent methyltransferase -
  JGR64_RS10945 (JGR64_10945) - 2384145..2384492 (-) 348 WP_199373408.1 DUF2304 domain-containing protein -
  JGR64_RS10950 (JGR64_10950) - 2384489..2385229 (-) 741 WP_199373409.1 glycosyltransferase family 2 protein -
  JGR64_RS10955 (JGR64_10955) - 2385240..2386049 (-) 810 WP_199373410.1 glycosyltransferase family A protein -
  JGR64_RS10960 (JGR64_10960) - 2386049..2386432 (-) 384 WP_199373411.1 hypothetical protein -
  JGR64_RS10965 (JGR64_10965) - 2386586..2387278 (+) 693 WP_199373412.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 49654.85 Da        Isoelectric Point: 6.8383

>NTDB_id=525100 JGR64_RS10930 WP_199373405.1 2381330..2382730(+) (pilR) [Luteimonas sp. MC1572]
MSEARSALIVDDEHDIRELLVLTLGRMGLRTDTAANLAVAREMLAVASYDLCLTDMRLPDGSGLELVSDISTRFPNTPVA
VITAYGNVEAAVEALKAGAFDFVNKPVDINVLRGLVRQALELNTKRTTRPEEASRLLGTSPAMVALRDTIAKVSRSQAPV
HISGESGTGKELVARTIHAQGARAGGPFVPVNCGAIPTELMESEFFGHKKGSFTGAHADKPGLFQTADGGTLFLDEVAEL
PLSMQVKLLRAIQEKKIRPVGASTEIDVDVRILSATHKDLNALVNAGSFRHDLYYRINVIELHVPALRERDGDLPLLSNA
IFARLAQAMHRTAPVLGPDALAALAGYAFPGNVRELENVLERAMALADSDHITAADLRLPTGGGGGFASQGRGAPMAAPP
PVGPSPGSLNPRETASSALPSYIEEIERAAIQQALTESRYNKTKAAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=525100 JGR64_RS10930 WP_199373405.1 2381330..2382730(+) (pilR) [Luteimonas sp. MC1572]
ATGAGTGAAGCCCGTAGCGCCCTTATCGTCGATGACGAACACGACATCCGCGAGCTGCTCGTACTCACCCTGGGCCGCAT
GGGCCTGCGCACCGACACCGCCGCCAACCTGGCGGTCGCACGCGAGATGCTGGCCGTCGCCAGCTACGACCTCTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCCGGGCTGGAACTGGTGAGCGACATCTCCACCCGCTTCCCCAACACCCCGGTGGCG
GTGATCACCGCCTACGGCAACGTCGAAGCCGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAACAAGCCGGT
CGACATCAACGTGCTCAGAGGCCTGGTGCGCCAGGCGCTGGAGCTCAACACCAAGCGCACCACGCGCCCGGAGGAAGCCA
GCCGCCTGCTCGGCACCTCGCCGGCCATGGTTGCCCTGCGCGACACCATCGCCAAGGTTTCGCGCAGCCAGGCGCCGGTG
CACATCAGCGGCGAGTCCGGCACCGGCAAGGAGCTGGTGGCCCGCACCATCCACGCCCAGGGCGCGCGCGCCGGCGGGCC
GTTCGTGCCGGTCAACTGCGGCGCCATCCCCACCGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCA
CCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGACCGCCGACGGCGGCACCCTGTTCCTGGACGAAGTGGCCGAGCTT
CCGCTGTCCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGAAGATCCGCCCGGTGGGTGCGAGCACCGAGATCGA
TGTCGACGTGCGCATCCTTTCGGCGACGCACAAGGACCTCAATGCGCTGGTGAATGCCGGCAGCTTCCGGCATGACCTGT
ATTACCGGATCAATGTGATCGAGCTGCACGTGCCGGCGCTGCGCGAGCGTGATGGCGACCTGCCGCTGCTGTCGAATGCG
ATCTTCGCGCGCCTGGCGCAGGCGATGCATCGCACTGCGCCGGTGCTGGGTCCGGATGCGCTGGCGGCCCTCGCGGGGTA
CGCGTTCCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAGCGGGCGATGGCGCTGGCCGACAGCGACCACATCACGG
CGGCGGATCTGCGCTTGCCGACGGGTGGCGGTGGCGGGTTTGCCTCGCAGGGTCGCGGCGCGCCGATGGCGGCACCGCCG
CCGGTGGGTCCATCACCCGGCTCGCTCAATCCCCGCGAGACCGCGTCGAGCGCCCTGCCGTCCTACATCGAAGAGATCGA
GCGCGCGGCGATCCAGCAGGCGCTGACCGAGAGCCGCTACAACAAGACCAAGGCAGCGGCGGCGCTGGGGATCACGTTCC
GGGCGTTGCGGTACAAGTTGAAGAAGCTCGGCATCGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.29

99.785

0.612
  pilR Acinetobacter baumannii strain A118

50

100

0.504