Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   K6131_RS13465 Genome accession   NZ_CP082047
Coordinates   2762133..2762870 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MS21199     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2757133..2767870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6131_RS13450 (K6131_13360) clpC 2757587..2760160 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  K6131_RS13455 (K6131_13365) yfiH 2760290..2761021 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  K6131_RS13460 (K6131_13370) rluD 2761018..2761998 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K6131_RS13465 (K6131_13375) comL 2762133..2762870 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  K6131_RS13470 (K6131_13380) raiA 2763140..2763481 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  K6131_RS13475 (K6131_13385) pheL 2763585..2763632 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  K6131_RS13480 (K6131_13390) pheA 2763731..2764891 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  K6131_RS13485 (K6131_13395) tyrA 2764934..2766055 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  K6131_RS13490 (K6131_13400) aroF 2766066..2767136 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  K6131_RS13495 (K6131_13405) yfiL 2767346..2767711 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=524857 K6131_RS13465 WP_000197686.1 2762133..2762870(+) (comL) [Escherichia coli strain MS21199]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=524857 K6131_RS13465 WP_000197686.1 2762133..2762870(+) (comL) [Escherichia coli strain MS21199]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376