Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JCR32_RS17820 Genome accession   NZ_CP067069
Coordinates   3492320..3493351 (-) Length   343 a.a.
NCBI ID   WP_001283851.1    Uniprot ID   Q9APZ2
Organism   Bacillus sp. HNR-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3487320..3498351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR32_RS17800 (JCR32_17710) - 3487925..3488848 (-) 924 WP_000688030.1 dipeptidase -
  JCR32_RS17805 (JCR32_17715) spoVS 3488908..3489168 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  JCR32_RS17810 (JCR32_17720) - 3489317..3490111 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  JCR32_RS17815 (JCR32_17725) rny 3490276..3491838 (-) 1563 WP_000099774.1 ribonuclease Y -
  JCR32_RS17820 (JCR32_17730) recA 3492320..3493351 (-) 1032 WP_001283851.1 recombinase RecA Machinery gene
  JCR32_RS17825 (JCR32_17735) cinA 3493496..3494734 (-) 1239 WP_274430163.1 competence/damage-inducible protein CinA Machinery gene
  JCR32_RS17830 (JCR32_17740) pgsA 3494755..3495333 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JCR32_RS17835 (JCR32_17745) - 3495397..3496347 (-) 951 WP_274430164.1 helix-turn-helix domain-containing protein -
  JCR32_RS17840 (JCR32_17750) - 3496360..3497145 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  JCR32_RS17845 (JCR32_17755) - 3497285..3497533 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  JCR32_RS17850 (JCR32_17760) - 3497609..3498322 (-) 714 WP_274430165.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37296.36 Da        Isoelectric Point: 4.9868

>NTDB_id=524810 JCR32_RS17820 WP_001283851.1 3492320..3493351(-) (recA) [Bacillus sp. HNR-4]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGMEDPNLLD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=524810 JCR32_RS17820 WP_001283851.1 3492320..3493351(-) (recA) [Bacillus sp. HNR-4]
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCAGAGCGCAAAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCATTAGGGGTAGGCGGAT
ACCCACGCGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATTGCAGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCTGAGCATGCAATGGATCCTGTATATGCACAAAAACTAGGTGT
TAACATCGATGAATTACTATTATCACAACCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCACTTGTACGAAGTG
GTGCGGTTGATATCATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAAATTGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAACAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTTAAAAATAAAGTGGCACCACCATTCCGTGTTGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCCTCTGAACTTGATATCGTTCAAAAGAGCGGTGCTTGGTACTCTTATAATGAAG
AACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACGGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGCGAAGATTCTGGTGCTGAAGGTATGGAAGATCCAAATCTTCTTGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9APZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.97

96.21

0.837
  recA Latilactobacillus sakei subsp. sakei 23K

76.758

95.335

0.732
  recA Streptococcus pyogenes NZ131

70.427

95.627

0.673
  recA Streptococcus mitis SK321

69.697

96.21

0.671
  recA Streptococcus mitis NCTC 12261

69.697

96.21

0.671
  recA Streptococcus pneumoniae R6

69.697

96.21

0.671
  recA Streptococcus pneumoniae TIGR4

69.697

96.21

0.671
  recA Streptococcus pneumoniae Rx1

69.697

96.21

0.671
  recA Streptococcus pneumoniae D39

69.697

96.21

0.671
  recA Streptococcus mutans UA159

68.452

97.959

0.671
  recA Lactococcus lactis subsp. cremoris KW2

67.964

97.376

0.662
  recA Neisseria gonorrhoeae strain FA1090

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Neisseria gonorrhoeae MS11

64.392

98.251

0.633
  recA Ralstonia pseudosolanacearum GMI1000

68.153

91.545

0.624
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Acinetobacter baylyi ADP1

60.87

100

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.044

0.606
  recA Helicobacter pylori 26695

62.614

95.918

0.601
  recA Helicobacter pylori strain NCTC11637

62.614

95.918

0.601
  recA Glaesserella parasuis strain SC1401

63.95

93.003

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

95.335

0.595
  recA Vibrio cholerae strain A1552

63.551

93.586

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

93.586

0.595
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.128

0.566